Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g0045 ATGACAAGGAGGAAGATAGAGATAAAGAAGATCGAGAACGTAGCAGCGAGGCAAGTGGCTTTCTCAAAGAGAAGGAAAGGTCTATTCAAGAAGGCCGTGGAGCTCTCTACTCTCTGTGATGCTGAGATTGCACTCTGTGTGTTTTCTGCTTCTGGCAAACTCTTTGATTACTGTAGTACAAGCATGAGGCAAGTGATTGAAAGGAGAAACTTGCACTCCTCGAATGTTGACCTTGCCAAGACATACCAGCCATCTCTTGAGCTGCAGGTAGAAGGTGAATATTTTAAGCTAAACAAGGAACTGAGAGAAAAGACTCGTGAACTGAGGCAGCTCAATGGAGAAGAACTTCAAGGATTGACCTTAAGAGAACTAAAGAAGCTAGAAGGTCTAATTAGCACATGCTTGCATCGTGTTTCAAAAGCCAAGGCTGAAGCATTTGAACAGGAGATCAGTATTCTTAAGAAAAAGGTAGACGTGCTCGTGGATGAAAACCAGAGACTAGAACAGGTTCAGAGGCTTGCGCATGAACAAGACCAATCATCGGCCATCACAACGATGCCACTCTTTCCCTGA 573 0.4415 MTRRKIEIKKIENVAARQVAFSKRRKGLFKKAVELSTLCDAEIALCVFSASGKLFDYCSTSMRQVIERRNLHSSNVDLAKTYQPSLELQVEGEYFKLNKELREKTRELRQLNGEELQGLTLRELKKLEGLISTCLHRVSKAKAEAFEQEISILKKKVDVLVDENQRLEQVQRLAHEQDQSSAITTMPLFP 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g0045 190 ProSiteProfiles K-box domain profile. 87 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci11g0045 190 Gene3D - 13 81 IPR036879 GO:0003677|GO:0046983
Prci11g0045 190 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Prci11g0045 190 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Prci11g0045 190 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Prci11g0045 190 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Prci11g0045 190 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Prci11g0045 190 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 165 - -
Prci11g0045 190 Coils Coil 143 170 - -
Prci11g0045 190 CDD MADS_MEF2_like 3 75 IPR033896 GO:0000977|GO:0045944
Prci11g0045 190 Pfam K-box region 89 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci11g0045 190 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Prci11g0045 190 Coils Coil 94 114 - -
Prci11g0045 190 SUPERFAMILY SRF-like 2 72 IPR036879 GO:0003677|GO:0046983
Prci11g0045 190 FunFam Transcription factor, MADS-box 13 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g0045 Prci-Chr11 636055 642729 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g0045 1 169 MADS-box Gene Family AT2G22540 54.386 7.65e-57 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Prci11g0045 K-box 1.5e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g0045 - - pcin:129285682 246.514