Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g0042 ATGACGAGGAGGAAGATAGAGATAAAGAAGATCGAGGACACACCAGCGAGGCAAGTGGCTTTCTCAAAGAGAAGAAAAGGTCTATTCAAGAAGGCCGTGGAGCTCTCTACTCTGTGTGATGCTGAGATCGCACTCTGTGTGTTTTCTGCTTCTGGCAAACTCTTTGAGTACTCTAGTACAAGCATGAGGCATGTCATTGAAAAGAGAAACTCGCTCTTAGATCTGAACCTTGACAGATCAAACCAGCCATCTCTTGAAGTGCAGGTAGAAGGTGAATATTTTAGGCTAGAAAAGGAACTGAAAGAGAAGAGTCATGAATTAAGGCAACTCAATGGAGAAGAACTACAAGGATTGACCTTAAAAGATCTAAGGAAACTAGAAGATTTAATTAACAAAAGCTTGCATCGCATTTCAAAAGCAAAGGATGAATTTTATGAGCAGGAGGTCAGTATTCTCAAGAACAAGGAAGCCAAACTCCTGGAGGAAAACCAGAGACTAAATCAGGAAATCAAACTCAGAGAAGAACAAAACCAGAGATTGCAACAGGTTCTAAGTCTTGAGCATGACCAAAACCAGTCACTGGACGCCTCTCCCAGACTGAGGAGCGTTTTTAATATAGGGAGCTTGTGGACCACATTTGAGAGGAAGATTGGAGTTTTGAGTTAA 666 0.4174 MTRRKIEIKKIEDTPARQVAFSKRRKGLFKKAVELSTLCDAEIALCVFSASGKLFEYSSTSMRHVIEKRNSLLDLNLDRSNQPSLEVQVEGEYFRLEKELKEKSHELRQLNGEELQGLTLKDLRKLEDLINKSLHRISKAKDEFYEQEVSILKNKEAKLLEENQRLNQEIKLREEQNQRLQQVLSLEHDQNQSLDASPRLRSVFNIGSLWTTFERKIGVLS 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g0042 221 Coils Coil 93 113 - -
Prci11g0042 221 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Prci11g0042 221 CDD MADS_MEF2_like 3 68 IPR033896 GO:0000977|GO:0045944
Prci11g0042 221 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Prci11g0042 221 ProSiteProfiles K-box domain profile. 86 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci11g0042 221 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 175 - -
Prci11g0042 221 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Prci11g0042 221 Coils Coil 123 143 - -
Prci11g0042 221 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677|GO:0046983
Prci11g0042 221 Coils Coil 149 183 - -
Prci11g0042 221 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Prci11g0042 221 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Prci11g0042 221 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Prci11g0042 221 Gene3D - 14 80 IPR036879 GO:0003677|GO:0046983
Prci11g0042 221 Pfam K-box region 88 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g0042 Prci-Chr11 568347 619300 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g0042 1 180 MADS-box Gene Family AT2G22540 48.901 7.04e-53 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Prci11g0042 K-box 1.6e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g0042 - - pcin:129285682 410.994