Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g0038 ATGGGCGAAGCAAGTGAAAATACCTCTAAAGAAACTGCACGTGAACATGAAGTTACAGAAGACCAGACTTTCGAAGAACTAGGATTGGATGCACGCCTAGTTCATGCCTTACTCAAAAAGGGAGTGGAGAAACTCACTCCAATTCAACAGGTGGCCATTCCACTCATATTGGAAGGTAAGGATGTGGTTGCTCGGGCAAAGACAGGTTCTGGCAAGACATTTGCATACCTTCTTCCATTGCTTCAAAAATTGTTTACTAATAATGTTCAAAGAAAGAAGCTATCACCCAATGCATTCATTCTTGTGCCAACTCGAGAACTATGTCAACAGGTATACGCAGAGGTTTCCTCCCTTATAGAATTATGCAGAGTTCAGTTGAAAGCTGTGCAATTGACAAGCAATATGAAGGCTTCTGATCTGCGGGCAGCAATGACTGGACCACCTGATGTATTGATTTCCACTCCTGCTTGCATTGCTAAATGCTTGTCCACTGACATACTTAAATCAACATCCATTAACAGTTCCCTTGAAACTCTAGTTCTTGATGAGGCAGATCTTCTGTTGTCATACGGCTATGAAAATGATATAAAAGCCTTTTCAGCTCATGTGCCTAGAAGTTGCCAATGTCTTCTAATGTCCGCAACATCAAGTGCTGATGTTGACAAGCTAAAGAAGTTGATTCTGCACAATCCCTTTATTTTGACTTTGCCTGAACTAGGAAATCAGAAGGATGAGATTATCCCTAAAAATGTTCAACAATTTTGGATCTCATGCCCTACCAGTGATAAGTTGCTTCACATCCTTGCCTTGTTGAAGTTGGAGCTGGTCCAAAAGAAAGTTCTAATATTTACCAATAGCATAGACATGAGTTTCAGATTGAAACTATTCTTGGAAAAGTTTGGGATCAAGTCTGCTGTTTTAAACGCTGAGTTGCCACAGAATTCTCGTCTTCATATTCTTGAGGAATTCAATGCTGGCCTCTTTGATTATCTTATTGCAACTGATGACAGCCACATAAAGGAGAAGGATGAAGCAACTAAGCAAAGTAATGGTGAGTTGTGGCGGTCCAAAAAACATGTCAAGCAAAAACTAGATTCTGAATTTGGAGTTGTGAGGGGAATTGACTTTAAAAATGTGTACACGGTTATGAACTTAGAAATGCCTCAAAGTGTTGCAGGATATGTCCATCGAATAGGACGTACTGGAAGAGCATACAATTCAGGCTCTTCTATATCTTTGGTTTCTCCTGATGAGATGGAAACTTTGGATGAAATAAAATCTTTTGTTGGGGATGATGAAAGCAATGGTTCAAGCACAATTGCTGAATTTCCATTGCTCACTAAGAATGCTGTGGAATCTTTACGTTATCGGGCTGAGGATGTTGCAAAGAGTGTGACAAAAATTGCGGTTCGTGAATCACGAGCCCAGGATTTGAGGAATGAAATTCTCAACTCTGAAAAACTGAAGGCACACTTTGAATCTAATCCAAGGGACCTAGATTTATTGAAGCATGACAAAGTTTTGAGCAAAAATGCCCCGCCGGCACACCTACGTGATGTGCCAGACTACCTAGTTGACAAAACAACGAAAGAGGCAAGGGAAATGGTCAAGCTTGCAAGGGAAGCAATGGGAAATAATAATCGATCCCGGGGATCCAGGAGGAAGAAGTTCAGAAAAGGTGGAGACCCTCTCAAGGCTATATCTGCCAAGGTATCAAAAAGACCACACAAAGGAGATGGACATAAACGCAGGAAGAAAAATGAAGTTTGA 1770 0.409 MGEASENTSKETAREHEVTEDQTFEELGLDARLVHALLKKGVEKLTPIQQVAIPLILEGKDVVARAKTGSGKTFAYLLPLLQKLFTNNVQRKKLSPNAFILVPTRELCQQVYAEVSSLIELCRVQLKAVQLTSNMKASDLRAAMTGPPDVLISTPACIAKCLSTDILKSTSINSSLETLVLDEADLLLSYGYENDIKAFSAHVPRSCQCLLMSATSSADVDKLKKLILHNPFILTLPELGNQKDEIIPKNVQQFWISCPTSDKLLHILALLKLELVQKKVLIFTNSIDMSFRLKLFLEKFGIKSAVLNAELPQNSRLHILEEFNAGLFDYLIATDDSHIKEKDEATKQSNGELWRSKKHVKQKLDSEFGVVRGIDFKNVYTVMNLEMPQSVAGYVHRIGRTGRAYNSGSSISLVSPDEMETLDEIKSFVGDDESNGSSTIAEFPLLTKNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFESNPRDLDLLKHDKVLSKNAPPAHLRDVPDYLVDKTTKEAREMVKLAREAMGNNNRSRGSRRKKFRKGGDPLKAISAKVSKRPHKGDGHKRRKKNEV 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g0038 589 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 248 429 IPR027417 -
Prci11g0038 589 Coils Coil 475 495 - -
Prci11g0038 589 SMART helicmild6 291 405 IPR001650 -
Prci11g0038 589 MobiDBLite consensus disorder prediction 540 589 - -
Prci11g0038 589 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 263 451 IPR001650 -
Prci11g0038 589 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 22 50 IPR014014 GO:0003724
Prci11g0038 589 Pfam DEAD/DEAH box helicase 46 223 IPR011545 GO:0003676|GO:0005524
Prci11g0038 589 Pfam Helicase conserved C-terminal domain 262 405 IPR001650 -
Prci11g0038 589 PANTHER RNA HELICASE 10 527 - -
Prci11g0038 589 MobiDBLite consensus disorder prediction 1 21 - -
Prci11g0038 589 CDD DEADc_DDX56 29 236 - -
Prci11g0038 589 Gene3D - 1 236 IPR027417 -
Prci11g0038 589 CDD SF2_C_DEAD 251 414 - -
Prci11g0038 589 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 14 235 IPR027417 -
Prci11g0038 589 Gene3D - 239 443 IPR027417 -
Prci11g0038 589 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 53 234 IPR014001 -
Prci11g0038 589 SMART ultradead3 41 254 IPR014001 -
Prci11g0038 589 Coils Coil 582 589 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g0038 Prci-Chr11 553272 562432 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g0038 23 445 Eukaryotic Initiation Factors Gene Family AT3G19760 25.708 4.95e-36 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g0038 K14810 - gmx:100800749 904.049