Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g0023 ATGGGTACTATGAATCCACAGCCACTGCAATTACGGCCTTTCGAGGACGGAGAACTACAGCTGGTGCAGGTTCCCATGCAGGTGGATGGTGTCGAAGATGGGTTAAATGCTCAATGTGTTAATGGACGTCGTGACGAGGTCAGTGATGTGGTGGAAGAAACTCGAGTGAGTTCTGGCTTACCGGGGACAAATGGTTGTGCTTTCAAGTCTCGAACCAGTGAACTTACCATTTCGTTTGAAGGCGAGGTCTATGTTTTCCCAGCGGTTACGCCAGAAAAGGTACAGGCTGTATTGTTATTGTTGGGAGGGTGTGAGATACCCAGCCCCTGTAGTGTCCCCAGCACCGAGCTTTTGCTACAACAGAACTATCAGAACATGAGGGGAATTAATGATACTTCTCGGGGTTCAAAGCTTTCACGGAGGTTTGCATCCCTTGTTAGGTTTCGTGAAAAGCGAAAAGAGAGATGTTTTGAGAAAAAAATTCGGTACAGCTGCCGTAAAGAAGTTGCACAGAGGATGCATCGCAAGAATGGACAGTTTGCATCATCAAAGGAATGTGACAGTTCTGCTGCTGAAAACTGGGACTCTAGCAACGGTGCTGCTTGTTCAGAATCTAATGAACGTAAATGCCAGCATTGTGGAATTAGTGAAAAGTCTACTCCAGCAATGCGGCGAGGACCAGCTGGTCCAAGATCTCTCTGCAATGCTTGTGGGCTTATGTGGGCAAATAAGGGGACTCTAAGAGATCTCAGCAAAGCAGGAAAGGTCACTTCTTTGGATCAAAATGAACTGGTATACATTCTTGCAAACCGAGAAAATTCCTGTCCTGCGCGGAATGATGAAGGAAGCCCCAAGGAGACTAAGCCTGATCTGTTGGAATCCAGACAATCACCCAAGATGTCGAATGAGCAGTATACACTTGAAACTGCTGAAGCAGTTACTGACAACTTATCCATCCAAGTGGAGAACCTTGCTGTTAATCTGCATGAGGAGGATACTCTTGAAGATCTCGCCGATGCATCTGGAACAGAATTTGAGATTCCTACAGGTTTTGATGAGCAGATTGACATTGATGATTCCAACTTGACCTACTGGTTATGA 1101 0.4605 MGTMNPQPLQLRPFEDGELQLVQVPMQVDGVEDGLNAQCVNGRRDEVSDVVEETRVSSGLPGTNGCAFKSRTSELTISFEGEVYVFPAVTPEKVQAVLLLLGGCEIPSPCSVPSTELLLQQNYQNMRGINDTSRGSKLSRRFASLVRFREKRKERCFEKKIRYSCRKEVAQRMHRKNGQFASSKECDSSAAENWDSSNGAACSESNERKCQHCGISEKSTPAMRRGPAGPRSLCNACGLMWANKGTLRDLSKAGKVTSLDQNELVYILANRENSCPARNDEGSPKETKPDLLESRQSPKMSNEQYTLETAEAVTDNLSIQVENLAVNLHEEDTLEDLADASGTEFEIPTGFDEQIDIDDSNLTYWL 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g0023 366 SMART GATA_3 204 257 IPR000679 GO:0006355|GO:0043565
Prci11g0023 366 PANTHER GATA TRANSCRIPTION FACTOR 28 36 346 IPR045280 GO:0006355
Prci11g0023 366 MobiDBLite consensus disorder prediction 275 302 - -
Prci11g0023 366 ProSiteProfiles Tify domain profile. 68 103 IPR010399 -
Prci11g0023 366 Pfam GATA zinc finger 210 246 IPR000679 GO:0006355|GO:0043565
Prci11g0023 366 ProSiteProfiles CCT domain profile. 141 183 IPR010402 GO:0005515
Prci11g0023 366 Gene3D - 204 255 IPR013088 GO:0006355|GO:0008270
Prci11g0023 366 ProSitePatterns GATA-type zinc finger domain. 210 237 IPR000679 GO:0006355|GO:0043565
Prci11g0023 366 MobiDBLite consensus disorder prediction 278 293 - -
Prci11g0023 366 Pfam CCT motif 141 183 IPR010402 GO:0005515
Prci11g0023 366 ProSiteProfiles GATA-type zinc finger domain profile. 204 271 IPR000679 GO:0006355|GO:0043565
Prci11g0023 366 CDD ZnF_GATA 209 252 IPR000679 GO:0006355|GO:0043565
Prci11g0023 366 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 206 257 - -
Prci11g0023 366 SMART tify_2 68 103 IPR010399 -
Prci11g0023 366 Pfam tify domain 71 102 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g0023 Prci-Chr11 270496 278920 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g0023 74 263 Tify Gene Family AT1G51600 54.680 8.96e-63 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Prci11g0023 CCT 5.6e-14 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g0023 - - gmx:102669848 441.81