Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g0022 ATGGGAAAACTTCATTCCTTTCTTCTTCTCTTATTCTCACTTCAATGTTGCTCCATAGCCTCCTTTGCTTGGAGTGAGACAAACATCATTTCTGACAAATATGAACTCCTTGCTCTTAAAAACTTTGTCACTTCAGATCCATACAATATCTTAGTCAATTGGTCTGTCTCTTTTTCTCCATGTAAATGGGTTGGTGTCGCTTGTGATATTCACATTGAAAGAGTCAATTCCTTGAATCTTAGTGATACGGGTCTGACGGGCATCTTATCTCCACGGTTGGGAAATCTATCATTTCTTAGTGAACTTGATCTTAGTAACAACAATTTTCATGGCCAAATACCAAATGAGTTAGTTCAACTCTGTAGGTTGAAATTACTGAACTTGAGCTATAATGACTTTCAAGGACAAGTTCTATCATGGATAGGAGATTTATCTGCACTTGAGCACTTGAATCTTCGAAACAATAGTCCTAGTGGAATTATTCCATTTTCTCTTTTCAATCTATCAAGGTTAGAGATCTTCGATTGGAATTCTAATTTGGTGGAAGGAATCATTCCAGTTGAGATTGGAAGACTCGAGCATTTGAAGATTTTACAACTCGGAGCTAACAAGCTTTCAGGAATCATTCCCCAAACAATTTCCAATTTATCATCACTTGAAATATTGAATTTGTCTAACAACACTTTATCAGGAAGCATTCCATATCTGGTTGGTTATCTTCCACAGCTAAAGAAATTGTACCTTGAACGGAATCTTCTTGTTGGTTCTGTACCATCTTCTTTATTTAATAGTTCAATGCTACAACACATTGCAATGGGAACAAATCAATTATCCGGCAGTCTTCCAACAAATGTGTGTTTTGGCCTACCAAAGCTTGAGACTTTTCTTGTGGAGGAGAATTATTTATCTGGCAAAATGCCCTCTATTTGGCATCAGTGCAAAGAATTGACTAAGATATCATTATCTGATAATAGATTCAACAGAGGATACATACCAAGTGACATTGGAAATTTGACCAAAATCCGACTTTTACATCTTTCAAAAAACAACTTGGAAGGTGAAATTCCGTCATCTCTATTCAACATTTCTACTCTGAGAGATATAAGTTTATGGGGAAACAATTTAAATGGCACTCTTCCAATATTAATTGCCAATTGGACGTTGATGGAATCCTTGGAATTAGAATACAACTTCTTCACAGGCACAATCCCTCCATTTCTATTCAACATGCCCTTTTTGAGAACGGTTGTCCTTGACAACAACCTTTTACATGGTAACATGACAGAAGAGATGTGCCATCAATTCGCGTTACTTGAAATCTTATCAGTTGTTGTGAATCAATTGGATGGAAATATTCCAAAATCATTAAGTAACTGCACATCATTGAAACTACTATATTTGGACACCAACTCATTCACAGGTTTTATACCCAAAGAAATTGGCAATCTTGATGGACTTGAAGGGTTAGATTTATCAAGTAACCATCTCAGTGGACTTTTTCCTTCCAATATATTCAACATTTCATCATTGACACATGTCAACATAGGCTGTAATTCTCTCTATGGCCTTCTCCCACAACATTTAGGAATTGGCCTTCCCAACTTGAAGGAATTGATGTTGGATGAGAATGAACTAACTGGACAAATTCCAAACAGCATCTCAAATTCTTCTAAACTCTTCAAGTTAGACCTGGCTTTGAATAAATTTAGTGGAGCTATACCCAATGTAGTTGGAAACTTAACAAACTTGATAGCATTATATTTGGAAGGGAATGATTTGGAGGGTTTGATTCCTAACACAATTAACAATTTACGAAACCTTCAATATTTAAGTCTCAGTGGCAATAGATTGCAAGCGTCCATTATCCATGAACTTTGCCAACTCAAAAGTTTAAGTGAGTTGTATCTTGCCAACAACATGTTTTCAGGAATGGTTCCAAGGTGCCTTGGGAATACTTCCCTGCGGAAGTTAGATTTTAGCTCTAACAAATTAATTTCTCATATACCCTCTTCTCTTTGGAGTCTCATAGATATCTTGGTTTTAGATTTATCCTCCAATGCATTGAGTGGAATAATCCCATTTGAGGTATCAAACTTGAGAGCAATTACATTATTGAACTTGTCGAGAAATCAAATTTCAGGAAGTATCCCAAAAACTATGGGTGGCTTGCAAACCTTGCTAAACCTATCCTTGGCCCATAACAAATTAGAAGGGCCAATTCCTGAATCACTTAGTAGCATGATAAGCATGGAGTTCTTGGATCTTTCTCATAATTATTTGTCTGGTGTAATTCCAAAGTCCTTAGAGTCACTAATCCATCTAAAGAACATTAATCTTTCCTACAATTTATTGCATGGAGAAATTCCAAATGGTGGGCCTTTTTTAAATTTTACTGCTCAATCTTTTATGATGAACAAGGATCTTAGTGGGAAGTCCCAACTGCAAGTCCAATCATGTAGGAAAGAAAACAAGCATATATCAACAAAAGTGATGATGTTCATGAAATTCTCATTGCCTATTATGGTTGTCATTTTGGTTATTTCATGCGTTGCCTTTCTAAAGCATACTAGAGAAGATGTTAATGATTTAACCAATAGGGATTCAATAAATTTGGAGACACCAATTTGGATATCCTATTATGAGCTTCTAAGAGGAACAAATGGATTTGATGAGAGTAATCTTCTTGGCTTTGGAAGTTATGGATCAGTATACAGAGCAATCCTTTCAAATGAAAGAATAGTTGCTGTTAAAGTATTTAACTCAGATTTGGAAGAAACATTAAGGAGTTTCGATGTTGAATGTGATGCCTTATGCAATTTACGTCATCGTAATCTTGTTAAGATAATTAGCTGTTGCTCAAAACATGATTTTAAATCTATAATCATGGAATTCATGTCAAATGAGAGTCTTGATATATGGCTGCACTCTCATGGCAAGTGTTTAGATATCTTGCAAAGGTTGAATATATTGATTGATGTGGCAACTGCATTAGAATATCTTCATCATGATACATCTAAGTTAGTTATTCATTGTGATGTAAAGCCGAGCAATGTATTGTTGGATGAAGATATGGTGGCTCATCTTGGTGATTTTGGTATCGCCAAATTGTTAGGGGAAGGACAAAATGAAATTTACACCAAAACCTTGGCTACAATTGGCTACATGGCACCAGGAGATGTATATGGTTATGGCATTTTGCTTATGGAAACTCTTACAAGAAAGAAGCCAACAAATGAGATGTTTGTTCAAGATTTATCTGAGGCACGACCTACTATTATTGATGTTGTTGTATCATTGAAAAAATCAAAAGTCATGTCTGTGTAA 3324 0.3562 MGKLHSFLLLLFSLQCCSIASFAWSETNIISDKYELLALKNFVTSDPYNILVNWSVSFSPCKWVGVACDIHIERVNSLNLSDTGLTGILSPRLGNLSFLSELDLSNNNFHGQIPNELVQLCRLKLLNLSYNDFQGQVLSWIGDLSALEHLNLRNNSPSGIIPFSLFNLSRLEIFDWNSNLVEGIIPVEIGRLEHLKILQLGANKLSGIIPQTISNLSSLEILNLSNNTLSGSIPYLVGYLPQLKKLYLERNLLVGSVPSSLFNSSMLQHIAMGTNQLSGSLPTNVCFGLPKLETFLVEENYLSGKMPSIWHQCKELTKISLSDNRFNRGYIPSDIGNLTKIRLLHLSKNNLEGEIPSSLFNISTLRDISLWGNNLNGTLPILIANWTLMESLELEYNFFTGTIPPFLFNMPFLRTVVLDNNLLHGNMTEEMCHQFALLEILSVVVNQLDGNIPKSLSNCTSLKLLYLDTNSFTGFIPKEIGNLDGLEGLDLSSNHLSGLFPSNIFNISSLTHVNIGCNSLYGLLPQHLGIGLPNLKELMLDENELTGQIPNSISNSSKLFKLDLALNKFSGAIPNVVGNLTNLIALYLEGNDLEGLIPNTINNLRNLQYLSLSGNRLQASIIHELCQLKSLSELYLANNMFSGMVPRCLGNTSLRKLDFSSNKLISHIPSSLWSLIDILVLDLSSNALSGIIPFEVSNLRAITLLNLSRNQISGSIPKTMGGLQTLLNLSLAHNKLEGPIPESLSSMISMEFLDLSHNYLSGVIPKSLESLIHLKNINLSYNLLHGEIPNGGPFLNFTAQSFMMNKDLSGKSQLQVQSCRKENKHISTKVMMFMKFSLPIMVVILVISCVAFLKHTREDVNDLTNRDSINLETPIWISYYELLRGTNGFDESNLLGFGSYGSVYRAILSNERIVAVKVFNSDLEETLRSFDVECDALCNLRHRNLVKIISCCSKHDFKSIIMEFMSNESLDIWLHSHGKCLDILQRLNILIDVATALEYLHHDTSKLVIHCDVKPSNVLLDEDMVAHLGDFGIAKLLGEGQNEIYTKTLATIGYMAPGDVYGYGILLMETLTRKKPTNEMFVQDLSEARPTIIDVVVSLKKSKVMSV 1107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g0022 1107 PRINTS Leucine-rich repeat signature 486 499 - -
Prci11g0022 1107 PRINTS Leucine-rich repeat signature 604 617 - -
Prci11g0022 1107 Gene3D Transferase(Phosphotransferase) domain 1 965 1106 - -
Prci11g0022 1107 Gene3D Ribonuclease Inhibitor 364 527 IPR032675 -
Prci11g0022 1107 Gene3D Ribonuclease Inhibitor 528 822 IPR032675 -
Prci11g0022 1107 ProSitePatterns Protein kinases ATP-binding region signature. 895 917 IPR017441 GO:0005524
Prci11g0022 1107 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 287 530 - -
Prci11g0022 1107 ProSiteProfiles Leucine-rich repeat profile. 218 240 IPR001611 GO:0005515
Prci11g0022 1107 SMART LRR_typ_2 604 627 IPR003591 -
Prci11g0022 1107 SMART LRR_typ_2 96 120 IPR003591 -
Prci11g0022 1107 SMART LRR_typ_2 216 239 IPR003591 -
Prci11g0022 1107 SMART LRR_typ_2 699 723 IPR003591 -
Prci11g0022 1107 SMART LRR_typ_2 628 651 IPR003591 -
Prci11g0022 1107 SMART LRR_typ_2 532 556 IPR003591 -
Prci11g0022 1107 SMART LRR_typ_2 747 770 IPR003591 -
Prci11g0022 1107 SMART LRR_typ_2 338 362 IPR003591 -
Prci11g0022 1107 SMART LRR_typ_2 240 264 IPR003591 -
Prci11g0022 1107 SMART LRR_typ_2 580 603 IPR003591 -
Prci11g0022 1107 SMART LRR_typ_2 192 215 IPR003591 -
Prci11g0022 1107 SMART LRR_typ_2 652 675 IPR003591 -
Prci11g0022 1107 SMART LRR_typ_2 483 507 IPR003591 -
Prci11g0022 1107 SMART LRR_sd22_2 723 746 - -
Prci11g0022 1107 SMART LRR_sd22_2 483 509 - -
Prci11g0022 1107 SMART LRR_sd22_2 651 667 - -
Prci11g0022 1107 SMART LRR_sd22_2 604 627 - -
Prci11g0022 1107 SMART LRR_sd22_2 192 218 - -
Prci11g0022 1107 FunFam Nuclear pore complex protein NUP107 29 181 - -
Prci11g0022 1107 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 531 823 - -
Prci11g0022 1107 SUPERFAMILY L domain-like 31 328 - -
Prci11g0022 1107 Pfam Leucine rich repeat N-terminal domain 32 69 IPR013210 -
Prci11g0022 1107 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1008 1020 IPR008271 GO:0004672|GO:0006468
Prci11g0022 1107 Pfam Leucine rich repeat 194 253 IPR001611 GO:0005515
Prci11g0022 1107 Pfam Leucine rich repeat 558 617 IPR001611 GO:0005515
Prci11g0022 1107 Pfam Leucine rich repeat 702 760 IPR001611 GO:0005515
Prci11g0022 1107 FunFam Os07g0541700 protein 965 1052 - -
Prci11g0022 1107 Gene3D Phosphorylase Kinase; domain 1 851 964 - -
Prci11g0022 1107 Gene3D Ribonuclease Inhibitor 29 181 IPR032675 -
Prci11g0022 1107 FunFam Leucine-rich repeat receptor protein kinase EMS1 185 284 - -
Prci11g0022 1107 Pfam Protein kinase domain 890 1078 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci11g0022 1107 ProSiteProfiles Protein kinase domain profile. 889 1107 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci11g0022 1107 SMART serkin_6 889 1105 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci11g0022 1107 SUPERFAMILY L domain-like 573 806 - -
Prci11g0022 1107 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 501 1087 - -
Prci11g0022 1107 SUPERFAMILY Protein kinase-like (PK-like) 871 1085 IPR011009 -
Prci11g0022 1107 Gene3D Ribonuclease Inhibitor 182 286 IPR032675 -
Prci11g0022 1107 SUPERFAMILY RNI-like 330 645 - -
Prci11g0022 1107 Gene3D Ribonuclease Inhibitor 287 363 IPR032675 -
Prci11g0022 1107 Pfam Leucine Rich Repeat 147 167 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g0022 Prci-Chr11 231662 238621 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g0022 36 1086 Receptor kinase-like Gene Family AT5G46330 33.639 4.70e-161 506
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Prci11g0022 Pkinase 6.1e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g0022 - K13420 pcin:129285519 1060.06