Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g0003 ATGTCTGAGGATGCTAGCCCAATGTTGGTAGTTTATGATGACCCCTCAGACCAACGATCCCTATCTTTGGATGATACAAGCAGCGCAGAGGAATCACCAGATGAAACCAGGCTTTCGTTGGAGACTACTAATGATTCAATTCCATATATTGGGCAAAGATTTAGCACTCATGATTCTGCATATGAATTTTATAGTGAATTTGCCAAGCAGTGTGGGTTCTCAATTCGACGACACCGTACAGAGGGAAAAGATGGTGTTGGAAAAGGACTAACTAGACGCTATTTTGTTTGCCATCGTGCTGGTAACACTCCTGTCAAAACATCAACTGAAAGTAAACCTCAAAGGAATCGAAAATCTTCCCGATGTGGATGCCAGGCTTACATGCGTATAAGCAAGACAACAGAATTAGGTACTCCAGAATGGCGTGTTACTGGTTTTGCCAACCACCATAATCATGAACTTTTAGAGCCAAATCAAGTTCGATTTCTTCCTGCATACAGAACTATTTCTGATTCAGACAAAAGCCGAATCCTGATGTATGCTAAAACTGGGATTTCTGTCCATCAAATGATGCGGCTTATGGAGCTTGAGAAGTGTGTGGAACCTGGATATCTACCTTTTACTGAAAAGGATGTGAGGAATTTACTTCAGTCATTTAGGAAATTAGAACCAGAAGAGGAAAGTATAGATTTATTAAGAATGTGCAGAAATATTAAGGATAAAGACCCTAATTTCAAATTTGAGTTCACACTTGATTCAAACAACTGTTTAGAGAATATAGCCTGGTCATATGCCTCATCAATACAGTCATATGATATCTTTGGTGATGCAGTGGTGTTTGATACAACACACCGCCTAACTGCATTTGACATGCCATTGGGTATATGGGTTGGAATGAATAATTATGGAATGCCTTGCTTTTTTGGCTGTGTGCTTCTACGAGAAGAAAACTTGAGGTCATATTCTTGGGCATTGAAGGCTTTCTTAGGGTTTATGAATGGGAAGCCTCCACAGACAATATTAACGGACCAAAACATGTGTCTCAAAGAAGCATTAGCCATGGAAATGCCAGCAACTAAACATGCTCTCTGCATATGGATGATTGTAGCAAAATTCCCTTCTTGGTTTAGTGCTGTTCTAGGAGAACGTTACAATGAGTGGAAGGCTGAATTTTATAGACTTTACAATCTTGAGTCAGTTGAGGATTTTGAGCTAGGTTGGAGGGATATGGTCAGTTCTTTTGCGCTGCATGCCAGTAGACACATTGCTAATTTATATACTTTACGCACGCTCTGGGCATTGCCATTCCTGAGAAGCCATTTTTTTGCGGGAATGACTACAACCGGTCAATCAAAGTCAATTAATGCTTTCATTCAACGATTTCTGAGTGCACAGACTCGGCTCGCACACTTTGTTGAGCAGGTAGCTGTTGCTGTGGATTTCAAAGATCAAACTGGAGAACAACAAACAATGCAACAGAACCTCCAAAATATTTGCCTCAAAACTGGAGCTCCTATGGAGTCACATGCTGCCGCAATCCTCACTCCTTTTGCCTTTTCAAAGCTTCAGGAACAACTTGTGTTGGCTGCTCATTATGCATCTTTTCCATTGGAAGATGGTTTCCTTGTGAGGCACCATACAAAAGCCGAGGGTGGTCGCAGAGTGTATTGGGCTCCTAGGGAAGGAATGATAAGTTGCAGCTGCCACCAGTTTGAGTTCTCTGGAATTCTCTGCAGGCATGCTCTTAGAGTTCTTTCAACAGGAAATTGTTTTCAGATCCCAGATAGATATCTTCCTTCTCGTTGGCGTCGAATCAGCTTGACCTCTGCTAAGACTCCTCATAGCACACCGAAGGATCATGCTGAAAGAGTACAATTATTACAAAATATGGTTTCTGCTCTTATCACAGAATCTGCCAAGTCAAAGGAAAGATTGGATCTTGCTACAGAACAAGTTTCCCTCCTCCTATCTCGAATAAGGGAGCAACCTGTTCCGTTACAAGGTGTCAGAGATATTTCTGGCATTGGTAGGAGTGTTTGA 2040 0.4157 MSEDASPMLVVYDDPSDQRSLSLDDTSSAEESPDETRLSLETTNDSIPYIGQRFSTHDSAYEFYSEFAKQCGFSIRRHRTEGKDGVGKGLTRRYFVCHRAGNTPVKTSTESKPQRNRKSSRCGCQAYMRISKTTELGTPEWRVTGFANHHNHELLEPNQVRFLPAYRTISDSDKSRILMYAKTGISVHQMMRLMELEKCVEPGYLPFTEKDVRNLLQSFRKLEPEEESIDLLRMCRNIKDKDPNFKFEFTLDSNNCLENIAWSYASSIQSYDIFGDAVVFDTTHRLTAFDMPLGIWVGMNNYGMPCFFGCVLLREENLRSYSWALKAFLGFMNGKPPQTILTDQNMCLKEALAMEMPATKHALCIWMIVAKFPSWFSAVLGERYNEWKAEFYRLYNLESVEDFELGWRDMVSSFALHASRHIANLYTLRTLWALPFLRSHFFAGMTTTGQSKSINAFIQRFLSAQTRLAHFVEQVAVAVDFKDQTGEQQTMQQNLQNICLKTGAPMESHAAAILTPFAFSKLQEQLVLAAHYASFPLEDGFLVRHHTKAEGGRRVYWAPREGMISCSCHQFEFSGILCRHALRVLSTGNCFQIPDRYLPSRWRRISLTSAKTPHSTPKDHAERVQLLQNMVSALITESAKSKERLDLATEQVSLLLSRIREQPVPLQGVRDISGIGRSV 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g0003 679 ProSiteProfiles Zinc finger SWIM-type profile. 553 589 IPR007527 GO:0008270
Prci11g0003 679 MobiDBLite consensus disorder prediction 1 42 - -
Prci11g0003 679 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 42 652 IPR031052 GO:0006355
Prci11g0003 679 Pfam FAR1 DNA-binding domain 62 155 IPR004330 -
Prci11g0003 679 Pfam MULE transposase domain 278 370 IPR018289 -
Prci11g0003 679 Pfam SWIM zinc finger 555 587 IPR007527 GO:0008270
Prci11g0003 679 SMART 26again6 564 591 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g0003 Prci-Chr11 5878 10118 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Prci11g0003 MULE 5e-18 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g0003 - - qsa:O6P43_012134 1262.28