LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci1173g0001	ATGTCAGTGGAACCTCCTCCTTTCCAAGAATCAGCGCGATGTGATGTCTGCAATTGCAGCTTCAACACCTTCAGGAGACGGCACCACTGTCGATGCTGTGGGAGAACATTGTGCCATGAACATTCATCAAATCAAATGGCTTTACCACAGTTTGGCATTTACTCAAATGTTAGAGTATGTGCTGATTGTTTCAACAATTCAGGATCTGGGAAGCATGACCCACAGCTTTCTTCGGATGGAACAAATAACATTACAAATGTAATTTCCAAACTAGACATCGACGCAGATGTAAATTCTAAGACAGCATCAAGAGCAGAGAGTAAGGTTGCATTAGACATAAAAGAGTGTAAGTGTGGAATGCCTCTTTGCATTTGTGAAGCTCCAGCCCCTTCCTCTGATGCACTGCCCCAGCAGAAGAAAATCACTCCAGTCACAACACCTCTGGCAAACCCTAAACCAAAGAAGTCAGATGTTGTTCCTAAAAGTAAAAGCTCCACATCAAACAGCAAGTTTAGTTCTTTCAATCTTGGTCACGTATCCAGTGGTGCCTCTGATGGTTCCCGGATGGAGTATGAAGCTACTGGAGAGGGTTTGAGAGAAGCAATAAAAAATGGTGACGTTGCTTCTGTCAAGAAACTTCTAAATCAGGGTGTGGATTCAAATTACAGGGACAAGCAAGGACTTTCTTTATTGCATTTGGCTGCTGTCTTCAATCAGACTGATATAGTTTTCATTCTCATGGATGCTGGGGCAAGCCTAGAGTACAAGAATGCACAAGGAGAAACGCCCTTCGATTGTGCGCCAGCTACGTTGCAATACAAAATGCGAAAGAAGATGGAAGAGGGCAAGGCAATGGATGGTCAAAGCATTTGA	873	0.4353	MSVEPPPFQESARCDVCNCSFNTFRRRHHCRCCGRTLCHEHSSNQMALPQFGIYSNVRVCADCFNNSGSGKHDPQLSSDGTNNITNVISKLDIDADVNSKTASRAESKVALDIKECKCGMPLCICEAPAPSSDALPQQKKITPVTTPLANPKPKKSDVVPKSKSSTSNSKFSSFNLGHVSSGASDGSRMEYEATGEGLREAIKNGDVASVKKLLNQGVDSNYRDKQGLSLLHLAAVFNQTDIVFILMDAGASLEYKNAQGETPFDCAPATLQYKMRKKMEEGKAMDGQSI	290

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci1173g0001	290	Pfam	Ankyrin repeats (many copies)	199	243	IPR002110	GO:0005515
	Prci1173g0001	290	Pfam	FYVE zinc finger	9	66	IPR000306	GO:0046872
	Prci1173g0001	290	PANTHER	VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 27	2	283	-	-
	Prci1173g0001	290	Gene3D	-	178	275	IPR036770	-
	Prci1173g0001	290	ProSiteProfiles	Zinc finger FYVE/FYVE-related type profile.	8	68	IPR017455	-
	Prci1173g0001	290	CDD	FYVE_scVPS27p_like	7	64	-	-
	Prci1173g0001	290	SMART	fyve_4	3	69	IPR000306	GO:0046872
	Prci1173g0001	290	ProSiteProfiles	Ankyrin repeat region circular profile.	226	257	-	-
	Prci1173g0001	290	SUPERFAMILY	Ankyrin repeat	199	268	IPR036770	-
	Prci1173g0001	290	MobiDBLite	consensus disorder prediction	142	170	-	-

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci1173g0001	204	264	MAP Kinase Kinase Kinase	AT4G18950	39.344	4.28e-09	55.1

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci1173g0001	-		-	gmx:100814367	435.261

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