Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Prci1173g0001 | ATGTCAGTGGAACCTCCTCCTTTCCAAGAATCAGCGCGATGTGATGTCTGCAATTGCAGCTTCAACACCTTCAGGAGACGGCACCACTGTCGATGCTGTGGGAGAACATTGTGCCATGAACATTCATCAAATCAAATGGCTTTACCACAGTTTGGCATTTACTCAAATGTTAGAGTATGTGCTGATTGTTTCAACAATTCAGGATCTGGGAAGCATGACCCACAGCTTTCTTCGGATGGAACAAATAACATTACAAATGTAATTTCCAAACTAGACATCGACGCAGATGTAAATTCTAAGACAGCATCAAGAGCAGAGAGTAAGGTTGCATTAGACATAAAAGAGTGTAAGTGTGGAATGCCTCTTTGCATTTGTGAAGCTCCAGCCCCTTCCTCTGATGCACTGCCCCAGCAGAAGAAAATCACTCCAGTCACAACACCTCTGGCAAACCCTAAACCAAAGAAGTCAGATGTTGTTCCTAAAAGTAAAAGCTCCACATCAAACAGCAAGTTTAGTTCTTTCAATCTTGGTCACGTATCCAGTGGTGCCTCTGATGGTTCCCGGATGGAGTATGAAGCTACTGGAGAGGGTTTGAGAGAAGCAATAAAAAATGGTGACGTTGCTTCTGTCAAGAAACTTCTAAATCAGGGTGTGGATTCAAATTACAGGGACAAGCAAGGACTTTCTTTATTGCATTTGGCTGCTGTCTTCAATCAGACTGATATAGTTTTCATTCTCATGGATGCTGGGGCAAGCCTAGAGTACAAGAATGCACAAGGAGAAACGCCCTTCGATTGTGCGCCAGCTACGTTGCAATACAAAATGCGAAAGAAGATGGAAGAGGGCAAGGCAATGGATGGTCAAAGCATTTGA | 873 | 0.4353 | MSVEPPPFQESARCDVCNCSFNTFRRRHHCRCCGRTLCHEHSSNQMALPQFGIYSNVRVCADCFNNSGSGKHDPQLSSDGTNNITNVISKLDIDADVNSKTASRAESKVALDIKECKCGMPLCICEAPAPSSDALPQQKKITPVTTPLANPKPKKSDVVPKSKSSTSNSKFSSFNLGHVSSGASDGSRMEYEATGEGLREAIKNGDVASVKKLLNQGVDSNYRDKQGLSLLHLAAVFNQTDIVFILMDAGASLEYKNAQGETPFDCAPATLQYKMRKKMEEGKAMDGQSI | 290 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Prci1173g0001 | 290 | Pfam | Ankyrin repeats (many copies) | 199 | 243 | IPR002110 | GO:0005515 | |
| Prci1173g0001 | 290 | Pfam | FYVE zinc finger | 9 | 66 | IPR000306 | GO:0046872 | |
| Prci1173g0001 | 290 | PANTHER | VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 27 | 2 | 283 | - | - | |
| Prci1173g0001 | 290 | Gene3D | - | 178 | 275 | IPR036770 | - | |
| Prci1173g0001 | 290 | ProSiteProfiles | Zinc finger FYVE/FYVE-related type profile. | 8 | 68 | IPR017455 | - | |
| Prci1173g0001 | 290 | CDD | FYVE_scVPS27p_like | 7 | 64 | - | - | |
| Prci1173g0001 | 290 | SMART | fyve_4 | 3 | 69 | IPR000306 | GO:0046872 | |
| Prci1173g0001 | 290 | ProSiteProfiles | Ankyrin repeat region circular profile. | 226 | 257 | - | - | |
| Prci1173g0001 | 290 | SUPERFAMILY | Ankyrin repeat | 199 | 268 | IPR036770 | - | |
| Prci1173g0001 | 290 | MobiDBLite | consensus disorder prediction | 142 | 170 | - | - | |
| Prci1173g0001 | 290 | ProSiteProfiles | Ankyrin repeat profile. | 226 | 258 | IPR002110 | GO:0005515 | |
| Prci1173g0001 | 290 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 4 | 70 | IPR013083 | - | |
| Prci1173g0001 | 290 | SUPERFAMILY | FYVE/PHD zinc finger | 9 | 67 | IPR011011 | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Prci1173g0001 | 204 | 264 | MAP Kinase Kinase Kinase | AT4G18950 | 39.344 | 4.28e-09 | 55.1 |