Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1148g0001 ATGGCCTCTGGCTGCCGAGATCGCACGTTGGAGTTCCGATCTCTCTCTCAAACTCTGAAGAAGATCGAGAGACCTCATCACCTGATCAAGCTGAAGATGTTCCTTCTACATCGAAACAATACACTCCTGTGTCCTATTCTAGATCTGAATTCAACAGAAGCCTCTCGAATTGGGTTGGGTATTCATGAAGCCTCCCAGAAGATTTCGAGGCTTGCTCAATGTAAGCCTACCTCTTTCATTACTTTCGTATTAATCTTTTTGCCTTTATGGAGGAGAGCTTTCGTCGCCGCGCTTCCCGAAAATTTGTCGACTTTACCTTTGGCGGCATACCGCATCCCACTAGCTGGATACGTAAATGAAAGGGAAAAGAACTATGAATTGGGAAGTGATTTGATTGTTGGCAAAGAAGTCTCGATGTTTAATGATCCCACTGTGGAAATACAAGAATTGACGGCCTTGATTAAGAATGACATCACGGCATTGAATTCAGCTCTTTCAGATTTACAAACTATTCAAAACATGGAAATAGCTGATGGAAATTATTCGGAGGATAGAATTGTTCATTCAACAGCTGTCTGTGATGACTTAAAGGGCAAACTTATGGGGGCAACTAAGCAGCTTCACGATGTGTTAACTAGCAGGACAGAGAATATCAAGGCTCATGAGAATAGGAAGCAAATATTTTCCAAGAAAGCGTCTAGAGGCAATCCTTTCCAGCATCGATCAGAGCCAGTGACTGAGCCACCCCCTTGGTCAAATTCATTAAATGCATCTGAAAGTTCGCAGCAAATATCAGCATCCCTTTCAAATGAAATCACACCGAGCAATCAATTAAGACGGAGGCTAGCTGCTGACAACGCTCCATCCCAGCAAATGGAAATGTCTATGATGCAGCAAGTGGTCCCAAGACAAGAAAGTTATAGTCAGAGTCGTGCAACTGCTCTGCACAGTGTGGAATCTACCATCACAGAACTGAGTGGGATTTTCACTCATTTGGCCACAATGGTTGCTCATCAAGGGGAACTAGCTATCAGGATTGATGACAACATGGATGAGTCATTGGCAAATGTTGAAGGAGCTCACAGTTCTTTATTGAAGCATCTCAGCCAAATATCATCGAATAGGTGGCTTCTGATCAAGATATTTGCCGTTCTGATACTATTTCTGCTGATCTTCATATTCTTCGTGGCCTGA 1194 0.4313 MASGCRDRTLEFRSLSQTLKKIERPHHLIKLKMFLLHRNNTLLCPILDLNSTEASRIGLGIHEASQKISRLAQCKPTSFITFVLIFLPLWRRAFVAALPENLSTLPLAAYRIPLAGYVNEREKNYELGSDLIVGKEVSMFNDPTVEIQELTALIKNDITALNSALSDLQTIQNMEIADGNYSEDRIVHSTAVCDDLKGKLMGATKQLHDVLTSRTENIKAHENRKQIFSKKASRGNPFQHRSEPVTEPPPWSNSLNASESSQQISASLSNEITPSNQLRRRLAADNAPSQQMEMSMMQQVVPRQESYSQSRATALHSVESTITELSGIFTHLATMVAHQGELAIRIDDNMDESLANVEGAHSSLLKHLSQISSNRWLLIKIFAVLILFLLIFIFFVA 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1148g0001 397 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 5 21 IPR021538 -
Prci1148g0001 397 CDD SNARE_syntaxin5 308 384 - -
Prci1148g0001 397 ProSitePatterns Syntaxin / epimorphin family signature. 311 350 IPR006012 GO:0005484|GO:0006886|GO:0016020
Prci1148g0001 397 Gene3D - 132 360 - -
Prci1148g0001 397 MobiDBLite consensus disorder prediction 215 303 - -
Prci1148g0001 397 Pfam SNARE domain 342 393 IPR000727 -
Prci1148g0001 397 MobiDBLite consensus disorder prediction 246 303 - -
Prci1148g0001 397 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 305 367 IPR000727 -
Prci1148g0001 397 SUPERFAMILY t-snare proteins 137 360 IPR010989 GO:0016020|GO:0016192
Prci1148g0001 397 SMART tSNARE_6 300 367 IPR000727 -
Prci1148g0001 397 MobiDBLite consensus disorder prediction 215 229 - -
Prci1148g0001 397 PANTHER SYNTAXIN 140 392 IPR045242 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1148g0001 133 397 SNARE and Associated Proteins AT5G05760 68.797 1.41e-120 351
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1148g0001 K08490 - gmx:100777383 379.407