Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1142g0002 ATGCCCAGCTCTAGAGCCTCGGAAAACAAAATCCAGATGGGTTCGTCTCTTCTTCAAAGCAACCCATCTTCTTTGGGTGAGAGAAGAGGAAGAAGAAAGCAAGGAGAAGCAGGAAGGTTTCTGGGGGTGAGAAGAAGACCATGGGGAAGATATGCTGCAGAAATTAGGGACCCCACAACTAAAGAAAGACACTGGCTTGGCACTTTTGATACTGCCCAAGAAGCTGCTTTGGCTTATGACAGAGCTGCTTTGTCCATGAAAGGAAGCCAAGCAAGAACCAACTTCGTATACACTGACAATACAACCTTTGACACGACTCTTCTTTGTCCCTTTGATGTTCAGCTTCAGTCACTCTTTAACACTACCCAGATGAAACCCTCAACCAATCAGAACAGTCCACCTCAGCTTTCTGAAACTTATTCCCAGGCTGGGACTAATGCTGCAAGTGATTCTTCTTCAGCTCAGGTGGGTGATAACTTATTCTTCTTCTCCAATGGTGATTCTAAATCAGGTTACCTGGAATGCATAGTTCCTGATGTCTGTTTCAGACCTTCATCTTCTTTTTCCAATGAAAGCAGCAGCCTGAACTCCATAGAAAGCAATAGTGCCTTAATTCCACTTGCTGACACAAATGCCAAAAAGATATCTCAAGAATCTGTGACAAACATGGCCTCAAGCTTTGGAGATTTCTCTTATCCAAATGAATTTGATCAAGAAACAATCTGGGATTGGAGCTGCAGTGAACTTGCTGCTATATTTAACAGTCCATTAAAGGTTGAAGATACAGACAGTTCAAGCCGTGGGATAATTTCCCAGGCTGCGACTACTTCATCAACCACCTATGCCCCATCACTTCCTTCGTTTGATGTTGATTTGGCTTACACACTCTTCTGA 894 0.4351 MPSSRASENKIQMGSSLLQSNPSSLGERRGRRKQGEAGRFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAQEAALAYDRAALSMKGSQARTNFVYTDNTTFDTTLLCPFDVQLQSLFNTTQMKPSTNQNSPPQLSETYSQAGTNAASDSSSAQVGDNLFFFSNGDSKSGYLECIVPDVCFRPSSSFSNESSSLNSIESNSALIPLADTNAKKISQESVTNMASSFGDFSYPNEFDQETIWDWSCSELAAIFNSPLKVEDTDSSSRGIISQAATTSSTTYAPSLPSFDVDLAYTLF 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1142g0002 297 ProSiteProfiles AP2/ERF domain profile. 39 96 IPR001471 GO:0003700|GO:0006355
Prci1142g0002 297 Pfam AP2 domain 42 88 IPR001471 GO:0003700|GO:0006355
Prci1142g0002 297 CDD AP2 39 95 IPR001471 GO:0003700|GO:0006355
Prci1142g0002 297 Gene3D AP2/ERF domain 39 97 IPR036955 GO:0003700|GO:0006355
Prci1142g0002 297 MobiDBLite consensus disorder prediction 26 40 - -
Prci1142g0002 297 FunFam Ethylene-responsive transcription factor 2 39 97 - -
Prci1142g0002 297 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 25 200 - -
Prci1142g0002 297 SUPERFAMILY DNA-binding domain 40 96 IPR016177 GO:0003677
Prci1142g0002 297 MobiDBLite consensus disorder prediction 1 25 - -
Prci1142g0002 297 MobiDBLite consensus disorder prediction 124 153 - -
Prci1142g0002 297 PRINTS Ethylene responsive element binding protein signature 62 78 IPR001471 GO:0003700|GO:0006355
Prci1142g0002 297 PRINTS Ethylene responsive element binding protein signature 40 51 IPR001471 GO:0003700|GO:0006355
Prci1142g0002 297 SMART rav1_2 39 102 IPR001471 GO:0003700|GO:0006355
Prci1142g0002 297 MobiDBLite consensus disorder prediction 1 40 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1142g0002 10 184 AP2-EREBP Transcription Factor Family AT5G18560 43.913 1.40e-50 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Prci1142g0002 AP2 1.3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1142g0002 - - pcin:129309284 545.043