Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1142g0001 GTTTTTGGAGCTTCGAGGACTGGCATGGAGTATCCAGAGCGAGTAGGCCAGCCCTGTATGTCAGGTACTCGATCTGGTTCTGCCTATATATGCTCTGGGAGAACATTATACATGATTGCTTTTGACATTGTCATTCATATTGGTCATACAAAATTTGATACTCAGCAGTCATTTTATTATATGAGGACAGGATCTTGCAAATTCGGTGCTTCATGTAAGTACCACCATCCTAGGCAGGGAGGAGGCGTTGCTCTTGATGAGAAAGAGTGTTCGTATTATGTGAAAACAGGACAATGCAAGTTTGGTGCAACTTGTAAATTCCATCATCCACAGCCTGCTGGTGTTCAAGTTCCTGCACCTCTATCAGTTCCCCAAGTCTCTTCTCTACCTGTCCGCGTACCTTCAATCGTTCTATCCAACTGTGCAGCCCTCCATCTGGTCCTTCATCACAAACAATATGGTGTAATGGTTGCAAGACCACCTCTACTACCAGGGTTGGAATCCTTATCAGGCTCCTACAAGCCCTGCATTCCATCTAGTACTCCATCAAATGTTGGTTCAACACACCTTTATGGGAATACTCAGCTACCTTCATCAGCACCTGCCTATACTTCACCTTATCAACCTGCAGGTTCCGCATTTGGTCCCTCAACACTAGTCAGAGAGAACAACATTCATTACCAGAAAGACCAGGTCAGGTCAGCCAGAATGTCAGCATTACATGAGAAACGGGAGAGTGTAGATTTGGTCCTTCCTGTAGGAGTTCTAAAAATTGTAGGGGATCTGATGATTGATGGTTTTCTATTTCCAAAACTGTCAGAGTCTAAGCTGATTTTGTCTCAAATTGCACAGGGTGCACCGCCTTGCACTCACTATGTGCAGCGAGGAGTATGCAAGTTTGGTCCTGCATGCAGGTTTGATCATTCTATGGGAACATTGACTTACAGTCCATCTGCTTCTTCTCTTGTTAATATGCCAGTTGTATCCATTCCTGTGGGTTCTTCCATCAGTACTCGTCCTCCATCGTCCTCATCATCAGAGTTGCAGCCTGAACGTAACCCTGGTTCTAGCCGGGAGCCTGGATCATTCAGAATTTCTTCTTCAATGAGCACAGCCACTGGATCAGTTGGCTTGGCTTTGTCAACTAGTGGAAACGTTTCTGAATCAAGTGCTCAAACATCCGCCCAAAGTTCTGTTCCGGTAGCAACTACGACTATCACAACAACCAGCACTGTCTCTCATGCCCCAAGCTAA 1254 0.4545 VFGASRTGMEYPERVGQPCMSGTRSGSAYICSGRTLYMIAFDIVIHIGHTKFDTQQSFYYMRTGSCKFGASCKYHHPRQGGGVALDEKECSYYVKTGQCKFGATCKFHHPQPAGVQVPAPLSVPQVSSLPVRVPSIVLSNCAALHLVLHHKQYGVMVARPPLLPGLESLSGSYKPCIPSSTPSNVGSTHLYGNTQLPSSAPAYTSPYQPAGSAFGPSTLVRENNIHYQKDQVRSARMSALHEKRESVDLVLPVGVLKIVGDLMIDGFLFPKLSESKLILSQIAQGAPPCTHYVQRGVCKFGPACRFDHSMGTLTYSPSASSLVNMPVVSIPVGSSISTRPPSSSSSELQPERNPGSSREPGSFRISSSMSTATGSVGLALSTSGNVSESSAQTSAQSSVPVATTTITTTSTVSHAPS 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1142g0001 417 ProSiteProfiles Zinc finger C3H1-type profile. 283 311 IPR000571 GO:0046872
Prci1142g0001 417 ProSiteProfiles Zinc finger C3H1-type profile. 51 79 IPR000571 GO:0046872
Prci1142g0001 417 SUPERFAMILY CCCH zinc finger 287 313 IPR036855 GO:0046872
Prci1142g0001 417 SMART c3hfinal6 55 78 IPR000571 GO:0046872
Prci1142g0001 417 SMART c3hfinal6 86 111 IPR000571 GO:0046872
Prci1142g0001 417 SMART c3hfinal6 283 310 IPR000571 GO:0046872
Prci1142g0001 417 MobiDBLite consensus disorder prediction 334 417 - -
Prci1142g0001 417 Gene3D - 48 119 - -
Prci1142g0001 417 ProSiteProfiles Zinc finger C3H1-type profile. 84 112 IPR000571 GO:0046872
Prci1142g0001 417 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 286 310 IPR000571 GO:0046872
Prci1142g0001 417 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 87 111 IPR000571 GO:0046872
Prci1142g0001 417 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 59 78 IPR000571 GO:0046872
Prci1142g0001 417 PANTHER PROTEIN PHOSPHATASE RELATED 283 344 - -
Prci1142g0001 417 SUPERFAMILY CCCH zinc finger 86 112 IPR036855 GO:0046872
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1142g0001 1 347 C2H2 Transcription Factor Family AT5G18550 36.317 9.76e-45 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Prci1142g0001 zf-CCCH 5.9e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1142g0001 - - pcin:129299397 795.808