Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1117g0001 ATGTCTGTGGATGATCTGTCAATGCATCAGAGAATGAGAGTATTACCTAACAGTGCATGTAAAATGGAAGCAATAGACAGTTTCAATAAAAGTACATCTTTGGAAAACCAAAGCTTTCTAATTCGAAAGTTTGCAATATCTGTTGAACCTATAAGCCTCGGCTCCATTGTGCATGGAAAGCTGTGGTGCGGTAAGCACATGATATATCCAAAAGGATTCAAGAGTCGTGTCAAGTTCTTTAGCATGCTTAATCCATCAAGAATCTGTAGCTATATTTCTGAAGTTCTTGATGGTGGCTTAATCGGACCTCTTTTCAAGGTTAGTATGGAAGAACATCCAAGTCAAGGTTTCACGAACATGTCAGCAGAGAAATGCTGGGAATCAGTTCTGGAGAGAGTAAATCGTGAGATCATCAGGCGCAGAAGCCAAGGGGAACTAAAACTTCCTCCATTGGAGCTTCTGCAAAGCATCCATGGTTTAAAAATGTTTGGGTTCCTTTCTCCATCAATTATCCAGGGTATTGAAGCTCTTGATCCCAGTCATCAATGCATAGAGTACTGGAATCACAAGGAATTAATCTCTTCTGTATCTTCCAGCAGTGCAAGTGATGACGTTAAGTTTGTGCATGGCAGTTCAAGTAGCCTGTCAGATGATGTCGACACCAAATTTTTCGGCATTGATTTGACAAAGCTGGATGAAAATGATGATAAACTTGCAGGAGCAAATCGCGACTCGTTTGAAGGGATGAAACTTATACTGGAAGCATTGTTGAAGAAAGCGAGTCCTGATGAGTTAAGCACAATGCAGAAGTTACTGGGGTCTGATGCTGAAAGTTCTCAGTGGAGAGTGGAAATTGCGGCACTGATAGAGGAGATCCAGAAAAGCTTGTAG 891 0.413 MSVDDLSMHQRMRVLPNSACKMEAIDSFNKSTSLENQSFLIRKFAISVEPISLGSIVHGKLWCGKHMIYPKGFKSRVKFFSMLNPSRICSYISEVLDGGLIGPLFKVSMEEHPSQGFTNMSAEKCWESVLERVNREIIRRRSQGELKLPPLELLQSIHGLKMFGFLSPSIIQGIEALDPSHQCIEYWNHKELISSVSSSSASDDVKFVHGSSSSLSDDVDTKFFGIDLTKLDENDDKLAGANRDSFEGMKLILEALLKKASPDELSTMQKLLGSDAESSQWRVEIAALIEEIQKSL 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1117g0001 296 ProSiteProfiles FYR domain FYRC motif profile. 100 190 IPR003889 GO:0005634
Prci1117g0001 296 PANTHER TRANSFORMING GROWTH FACTOR BETA REGULATED GENE 1 51 209 IPR040092 -
Prci1117g0001 296 SMART fyrc_3 104 192 IPR003889 GO:0005634
Prci1117g0001 296 Pfam F/Y-rich N-terminus 51 95 IPR003888 GO:0005634
Prci1117g0001 296 ProSiteProfiles FYR domain FYRN motif profile. 40 98 IPR003888 GO:0005634
Prci1117g0001 296 FunFam Putative lysine-specific demethylase JMJ16 46 184 - -
Prci1117g0001 296 Pfam F/Y rich C-terminus 102 188 IPR003889 GO:0005634
Prci1117g0001 296 Gene3D - 46 184 - -
Prci1117g0001 296 SMART fyrn_3 54 98 IPR003888 GO:0005634
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1117g0001 21 228 JUMONJI Transcription Factor Family AT1G30810 49.519 8.60e-59 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1117g0001 K11446 - pcin:129299339 578.941