Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci110g0005 ATGGGAAAGATAATGACAGAAAGTGCAGCTAGAGTTACGTTATTGTTAATGGCCACATTGGCCATTACTGTTCCATGCCTCGTCGACGCTAACATTGGAGATTTTGACGATTATCTCCGAGAAAAAGCTAAGCAGGCCCGGAGAGTGGCTCTTGAAGCATACGAACCTAACCCTTTGAAGGTCACGTCAGAGCTCAATATGCATGTCCATCTGGCGATGAATGAGGCCAAAAACAGCAGTAGAGGGAGGGACTTGAGCGAGAAGAGACACAAAGGACCGTGCTTGACCACCAACCCAATCGATCGATGCTGGAGATGCGACAAAGACTGGGAGAAGAATCGCTTTAAGCTAGCCGAATGTGCCATGGGTTTCGGCCGCAAGACCACCGGCGGGTTGGGCGGTAAGATCTATGTCGTCACAGATTCTTCCGACGTCGATGTAGCTAACCCGAAACCGGGAACTCTGAGGTACGCGGCGATCCAGAAGGAGCCATTGTGGATCATATTTGCGCACAGCATGGTGATTAAGCTGAAACAGGAGTTGCTGGTGAATTCCGACAAGACAATCGATGGACGAGGAGCCAATATTCACATAAAAAGCGGTGGCGGCCTCACCCTGCAATTCGTGAAGAACGTCATCATCCACAATCTTCGCATTCGCAATATCAAAGCAAAGAAGGGAGGTCTGGTGAGGGATGCTCCGGACCATGTCGGGTTGAGAACCAGAAGCGATGGCGATGCCATCAGCATCTTCGGATCCACCAACGTCTGGATCGATCACATCTCGATGTCCAGCGACGACGGGCTAGTCGACGCCATCATGGGTTCCACCGCCATTACCATATCAAATTGCCACATGACGAGACACAACGATGTGATGCTGTTTGGAGCAGGAGACGTGTATCAACAGGACAGGGTGATGCAGGTAACGGTGGCGTTCAACCACTTTGGGAACGGATTGATACAGAGGATGCCGAGGTGCAGACATGGGTGGTTCCACGTGGTGAACAACGACTACCATAACTGGATAATGTACGCCATCGGAGGAACGGCGAATCCGACCATACTCAGCCAAGGAAACCGGTTCAGTGCTCCGAACAACGAAGCAGCGAAGCAGGTTACAAACAGAGTGAGTGCGCCGGAATCGGCGTGGAAAAACTGGCGGTGGCAGACGGAGCATGACGAGTTTGTGAACGGAGCTTTTTTTGTACCGTCGGGAACACCTATAACTGAATCTAAATTCGACAAAGAGG 1252 0.5112 MGKIMTESAARVTLLLMATLAITVPCLVDANIGDFDDYLREKAKQARRVALEAYEPNPLKVTSELNMHVHLAMNEAKNSSRGRDLSEKRHKGPCLTTNPIDRCWRCDKDWEKNRFKLAECAMGFGRKTTGGLGGKIYVVTDSSDVDVANPKPGTLRYAAIQKEPLWIIFAHSMVIKLKQELLVNSDKTIDGRGANIHIKSGGGLTLQFVKNVIIHNLRIRNIKAKKGGLVRDAPDHVGLRTRSDGDAISIFGSTNVWIDHISMSNXDDGLVDAIMGSTAITISNCHMTRHNDVMLFGAGDVYQQDRVMQVTVAFNHFGNGLIQRMPRCRHGWFHVVNNDYHNWIMYAIGGTANPTILSQGNRFSAPNNEAAKQVTNRVSAPESAWKNWRWQTEHDEFVNGAFFVPSGTPITESKFDKE 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci110g0005 418 SUPERFAMILY Pectin lyase-like 98 409 IPR011050 -
Prci110g0005 418 PANTHER PECTATE LYASE 18-RELATED 46 411 IPR045032 GO:0030570
Prci110g0005 418 PRINTS Pollen allergen Amb family signature 120 137 IPR018082 -
Prci110g0005 418 PRINTS Pollen allergen Amb family signature 388 412 IPR018082 -
Prci110g0005 418 PRINTS Pollen allergen Amb family signature 324 343 IPR018082 -
Prci110g0005 418 PRINTS Pollen allergen Amb family signature 346 365 IPR018082 -
Prci110g0005 418 PRINTS Pollen allergen Amb family signature 144 169 IPR018082 -
Prci110g0005 418 PRINTS Pollen allergen Amb family signature 180 196 IPR018082 -
Prci110g0005 418 PRINTS Pollen allergen Amb family signature 244 265 IPR018082 -
Prci110g0005 418 Gene3D - 97 418 IPR012334 -
Prci110g0005 418 Pfam Pectate lyase 178 363 IPR002022 -
Prci110g0005 418 SMART amb_all 172 369 IPR002022 -
Prci110g0005 418 Pfam Pectate lyase, N terminus 31 81 IPR007524 GO:0030570
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci110g0005 12 407 Polysaccharide Lyase AT1G14420 57.531 8.82e-171 484
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci110g0005 K01728 - gmx:100780236 547.74