Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1109g0004 ATGGCTCGCCTACTGCTAAGCACAGATTCAACATCAAGTCTATCAGGTCATGGCAACAGGACAGGGGGTTTTAACACTAGTGATGCCAATTTCGACACAAACATGGTGATTATACTAGCAGCCTTGCTCTGTGCACTAATATGTGCTTTAGGGCTAAACTCAATTGTAAGATGTGCTTTGAGATGCAGCAGCAGGTTTGCTTTTGAGACACCAGATGAAGCGGCAGCTCGTGTAGCAGCAAAAGGGTTGAAGAAGAGTGTGTTGTGTCAGATCCCTATAGTTGTATATGGTTCATCAGGTGCTACTGATATTGGAGCCACTGAGTGTCCAATTTGCCTAGGAGAGTTTGTGGATGGGGAGAAAGTGAGGGTTCTTCCTAAGTGCAACCATGGATTCCATGTGAGGTGTATAGACACATGGCTTCTCTCACATTCTTCTTGCCCTACTTGCAGACAGTCTTTGGTTGAACAACACTGTGCAAACACTTCTGGTTCTGGAGATGTATAG 507 0.4517 MARLLLSTDSTSSLSGHGNRTGGFNTSDANFDTNMVIILAALLCALICALGLNSIVRCALRCSSRFAFETPDEAAARVAAKGLKKSVLCQIPIVVYGSSGATDIGATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLLSHSSCPTCRQSLVEQHCANTSGSGDV 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1109g0004 168 CDD RING-H2_EL5-like 108 151 - -
Prci1109g0004 168 SMART ring_2 109 150 IPR001841 -
Prci1109g0004 168 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 156 IPR013083 -
Prci1109g0004 168 SMART FANCL_C_2 105 157 - -
Prci1109g0004 168 Pfam Ring finger domain 108 151 IPR001841 -
Prci1109g0004 168 FunFam RING-H2 finger protein ATL72-like 74 155 - -
Prci1109g0004 168 PANTHER RING-H2 FINGER PROTEIN ATL78 25 164 IPR044602 GO:0016567|GO:0016740
Prci1109g0004 168 ProSiteProfiles Zinc finger RING-type profile. 109 151 IPR001841 -
Prci1109g0004 168 SUPERFAMILY RING/U-box 108 157 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1109g0004 1 158 C3H Transcription Factor Family AT3G10910 59.639 2.34e-61 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1109g0004 - K19040 qsa:O6P43_020103 237.654