Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1100g0005 ATGGCGAAGGAAGCCACGAGGCCGCGAAAGAGGTCTCTCTCATCTCCCCCTGCTTCTGCTTCCGATGAACGCTCTACAAGAACTTCTTCTGACAGGGTAGTGTTGAGGGTAAAATTCAATGAGGGGACGAAGAGATCTTCCCAGCTGACTCAGTCAGGGAAGAAACCCAAAGCAAAGCAAAAGAAGATTAACAAAAAACTTGATGCTAAGAAGCCAAAGAAACCCCCAACTGCTTTCTTCTTCTTCTTGGAGGATTTTCGTAAAGAATTTCAAGAGCAGAATCCAGATGTTAAGTCAATGCGTGATATTGGCAAGGCTTGTGGAGAGAAGTGGAAAACAATGACTTATGAGGAGAAGGTTCAATACTACGATATAGCCACTGAAAAACGAGCAGAATTTGATAGAGCAATGATCGAATATAACATGAAAATGGAAAGTGGAGAGTACGAAGAAACTGACGAGGAATCAGAGTTTGATGTGTAG 483 0.4286 MAKEATRPRKRSLSSPPASASDERSTRTSSDRVVLRVKFNEGTKRSSQLTQSGKKPKAKQKKINKKLDAKKPKKPPTAFFFFLEDFRKEFQEQNPDVKSMRDIGKACGEKWKTMTYEEKVQYYDIATEKRAEFDRAMIEYNMKMESGEYEETDEESEFDV 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1100g0005 160 MobiDBLite consensus disorder prediction 1 74 - -
Prci1100g0005 160 SMART hmgende2 71 142 IPR009071 -
Prci1100g0005 160 MobiDBLite consensus disorder prediction 55 69 - -
Prci1100g0005 160 Pfam HMG (high mobility group) box 72 141 IPR009071 -
Prci1100g0005 160 Gene3D High mobility group box domain 65 156 IPR036910 -
Prci1100g0005 160 SUPERFAMILY HMG-box 57 140 IPR036910 -
Prci1100g0005 160 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 45 157 IPR031061 -
Prci1100g0005 160 CDD HMG-box_AtHMGB1-like 77 133 - -
Prci1100g0005 160 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 72 141 IPR009071 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Prci1100g0005 HMG_box 1.1e-18 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1100g0005 - - gmx:100305607 162.54