Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g3060 ATGGTGGACCAAGTTAAGGTTTGTGAGATGGGTCGAGGGAAGATCGAGATCAAGAGGATTCAGAACACCACCACCAGACAGGTGACCTTCTCAAAACGCAGAGCTGGACTTGTGAAGAAGACTCATGAGCTTTCTGTTCTCTGTGACGCCCAAATTGGCCTCATCATCTTCTCTAGCACCGGCAAGATGTTTCAGTACTGCAGCGAACCTTTCAGGATGGAGCAGGTCATTGAAAGATACCAGAAAGCTACAGGAGTACGCATACCGGAACATGATAATCGGGAAGATTTATTCAGCGAAATGGCAATGCTGAGGCAGGAGACTCTGCGTCTGGAGCTGGGAATTCAGAGGTATATCGGAGACAGCATGGGCAGTTTACAGTACGAGGAACTGACTAAACTGGAACAAGAGCTGGAGATATCTGTCACCAAGGTCCGAAATCGCAAGAATGATCTGTTGCAACAGCAGGTGGATAATCTGCGAAGAAAGGAAAGAATGATGGAAGAAGAGAACAGTTATCTGTCGCAGTGGCAGAATGAAAGCGGAGGACAGCAGATGGTGGAGCAGCTGGCATTTTACAACGAGGCTCCTCTTCTCCATCCCTATCTCCAGCTCGCCCAGCCCTCCACCATTCACCACCCTTGA 645 0.4899 MVDQVKVCEMGRGKIEIKRIQNTTTRQVTFSKRRAGLVKKTHELSVLCDAQIGLIIFSSTGKMFQYCSEPFRMEQVIERYQKATGVRIPEHDNREDLFSEMAMLRQETLRLELGIQRYIGDSMGSLQYEELTKLEQELEISVTKVRNRKNDLLQQQVDNLRRKERMMEEENSYLSQWQNESGGQQMVEQLAFYNEAPLLHPYLQLAQPSTIHHP 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g3060 214 ProSiteProfiles MADS-box domain profile. 10 70 IPR002100 GO:0003677|GO:0046983
Prci10g3060 214 ProSitePatterns MADS-box domain signature. 12 66 IPR002100 GO:0003677|GO:0046983
Prci10g3060 214 SUPERFAMILY SRF-like 11 88 IPR036879 GO:0003677|GO:0046983
Prci10g3060 214 Pfam K-box region 90 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci10g3060 214 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 19 66 IPR002100 GO:0003677|GO:0046983
Prci10g3060 214 Coils Coil 128 180 - -
Prci10g3060 214 Gene3D - 23 105 IPR036879 GO:0003677|GO:0046983
Prci10g3060 214 PRINTS MADS domain signature 12 32 IPR002100 GO:0003677|GO:0046983
Prci10g3060 214 PRINTS MADS domain signature 32 47 IPR002100 GO:0003677|GO:0046983
Prci10g3060 214 PRINTS MADS domain signature 47 68 IPR002100 GO:0003677|GO:0046983
Prci10g3060 214 SMART madsneu2 10 69 IPR002100 GO:0003677|GO:0046983
Prci10g3060 214 CDD MADS_MEF2_like 11 87 IPR033896 GO:0000977|GO:0045944
Prci10g3060 214 PANTHER SERUM RESPONSE FACTOR HOMOLOG 10 181 - -
Prci10g3060 214 ProSiteProfiles K-box domain profile. 94 187 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g3060 Prci-Chr10 39107535 39109887 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g3060 9 193 MADS-box Gene Family AT5G23260 51.980 7.00e-66 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Prci10g3060 K-box 1e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g3060 - - pcin:129321394 426.402