Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g3059 ATGGGTCGAGGGAAGATCGAGATCAAGAGGATTCAGAACACCACCACCAGACAGGTGACCTTCTCAAAACGCAGAGCTGGACTTGTGAAGAAGACTCATGAGCTTTCTGTTCTCTGTGACGCCCAAATTGGCCTCATCATCTTCTCTAGCACCGGCAAGATGTTTCAGTACTGCAGCGAACCTTTCAGGATGGAGCAGGTCATTGAAAGATACCAGAAAGCTACAGGAGTACGCATACCGGAACATGATAATCGGGAAGATTTATTCAGCGAAATGGCAATGCTGAGGCAGGAGACTCTGCGTCTGGAGCTGGGAATTCAGAGGTATATCGGAGACAGCATGGGCAGTTTACAGTACGAGGAACTGACTAAACTGGAACAAGAGCTGGAGATATCTGTCACCAAGGTCCGAAATCGCAAGAATGATCTGTTGCAACAGCAGGTGGATAATCTGCGAAGAAAGGAAAGAATGATGGAAGAAGAGAACAGTTATCTGTCGCAGTGGCAGAATGAAAGCGGAGGACAGCAGATGGTGGAGCAGCTGGCATTTTACAACGAGGCTCCTCTTCTCCATCCCTATCTCCAGCTCGCCCAGCCCTCCACCATTCACCACCCTTGA 618 0.4919 MGRGKIEIKRIQNTTTRQVTFSKRRAGLVKKTHELSVLCDAQIGLIIFSSTGKMFQYCSEPFRMEQVIERYQKATGVRIPEHDNREDLFSEMAMLRQETLRLELGIQRYIGDSMGSLQYEELTKLEQELEISVTKVRNRKNDLLQQQVDNLRRKERMMEEENSYLSQWQNESGGQQMVEQLAFYNEAPLLHPYLQLAQPSTIHHP 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g3059 205 Coils Coil 119 171 - -
Prci10g3059 205 Gene3D - 14 96 IPR036879 GO:0003677|GO:0046983
Prci10g3059 205 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Prci10g3059 205 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Prci10g3059 205 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Prci10g3059 205 ProSiteProfiles K-box domain profile. 85 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci10g3059 205 Pfam K-box region 81 167 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci10g3059 205 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 172 - -
Prci10g3059 205 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Prci10g3059 205 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Prci10g3059 205 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Prci10g3059 205 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Prci10g3059 205 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
Prci10g3059 205 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g3059 Prci-Chr10 39107526 39109887 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g3059 1 184 MADS-box Gene Family AT5G23260 51.741 2.00e-65 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Prci10g3059 K-box 9.5e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g3059 - - pcin:129321394 408.297