Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Prci10g3052 | ATGGGCAAATCCAGCAAGAAATCAGCTCCCAAGGTTGACCCTGCTCCGGCTGTTGTTCCGCCTTTGAAGTCTGCAAAGAAAGGCAAGAGGGAAGCTGAGGATGAACTTGAGAAGCACGTGAGTGCAAAGAAGCAGAAGAGAGATGAAGTTGCTGAGAAGAAGAATGCCAAGGTGCAGAAAAACAAGAAGGAAAGTAGTTCAGATGATTCCTCTTCATCAGATTCTGAGGAAGACAAGAAAACAGCCCCAAAAGCTGTTCTTCCATCGAAGACACAACTTTCTAAGAATGGTGCTCTAAGTGGCCGGGTGAACAAAGGCAAGCCAGCTAGTAGTTCCAGTTCTTCTGAATCCTCTGACGATGAGTCCGACAGTGATGATGCTGGAAAAACCAAGGTAGCCTCTGCTGCTGGCAAGAATGGAGCTCTGACAAAGAAGAAAGTTGAGTCTAGTGACAGCTCTGATACTGATAGCAGCTCAGATGAAGAAAATGATGTGAGAACTAAAGTTGCCCCGCTATCCAAAAAGGTACCTGTTTCTGCCACTAAGAAAGTTGAATCAGACTCGGAATCTGACAGCAGCTCTGATGAGGATGATGTCCCTACTAAATCATCCAAGAAGTTGTTGGCTGCTCCTGCTGCAGGTAAAAGTATGCCTGCCAAAAAAATTGGGTCAAGTGATGACACAGCCTCAGATAGTAGCTCAGATGATGATGATCTAACGACAAGGGTACCTGCTGCATCAAAGAAGTTGCCTGCTACAGCAGTTCCTTCAAAGAAAAAAGTTGAGAGCAGTGAAAGCACCGATGATGAATCAAGTGAGAGCTCTGATGAAGATAATGGTATGAAGTCTTCTGTCAAAGCAGTTCCCAAGCCTTCCAATACTCGAAAGAAGGCTGAATCAAGTGAGAGCTCAGATTCTGATAGCAGTAGCTCTGAGGAAGACACCAAAAATAAAAAAGGATCCAACATTGCTTCCAATAAGAAGCCAGAAAGGGCTTCTGAGAAGATTTCCAAGTTAAAGGAAAGTTCTGATGAGACTGATTCTGATGACGAGGAGGAGTCCTCTGACAGTGATTCTGAGGATGAGAAGAAAACTGTTCCTAAGGCTAGTGCTAAAGCAGCTGCTGCAGTGAAGACAGCTAAAGGGGAACCTAGTGAAAGTTCATCTGAAGATGACTCTTCAGAAGATGAGAAAACTGCGCCCCAGGCTCATATCAAAGCATCTGCTGGTGTGAAGACAGTTAAAAAGGAGTCTAGTGATAGCTCATCTGAAGATGACTCTTCTGAAGATGAGGATAAGATGGATGTTGATGAAGAAAGCGAGGAGGAGCCACCAAAGAAAAAGTCTCAAAAAGTTTCAAAGGAAAGCAATGAAAATTCAGAGAGCTCAGATGATAGCGAAGATGATGATGATGAGACACCTTCCAAGACTCGGAAATATGCTAAGGATTTGGAGATGGTTGATGCTGCATCGGCAAAGTCAAATGGAAAGAAAACTCCTAGCACCCCTGCTACTCCAAAAGTACAGAATGTGGCATCAAAGTCACTATTTGTTGGAAATTTGTCATTTAAAGTATCACGGGCTGATGTGGAAGACTTCTTTAAAGATTGTGGAGAAGTGGTTGATGTCCGTTTGGCCTCAGATGAAAATGGGAGATTTAAAGGTTTTGGGCATGTCGAATTTGCCACAGAAGAAGCCGCACAAAATGCCCTTGAGTTGAATGGGGAAGAATTGCTTCAGCGTCCTGTCAGACTTGATTTGGCTCGTGAAAGGGGAGCCTATACCCCTTCTAGCGGCAACTTTAGCAATGCATTCCAGAAAGGAGGACAAGCTCAAGTGCATACAATATTTATCAAGGGTTTTGATGCATCCCAAGGGGAAGATGTGATTAAAACAAACCTCAAAGAGCATTTCAGTTGTGGAGAGATTACAAGGATATCAATTCCTAAAGATTATGATAGTGGAGCTGTCAAGGGGTATGCCTACATTGATTTCAAGGATGTTGATGCCTTCAACAAAGCGCTAGAATTGAATGGTAGTGAGCTTGGAGGTGGTTATTATTTGACAGTTGATGAGGCAAAACCTCGAGTTGATAATCAAGGTGCAAGTGGTGGTAGAGGTGGTGGAAGGAGTGGTGGTAGAGGCGGAAGAGGTGGCGGCGGGCAATTTGGTGGAAGAGGTGGTGGCGGTCAATTTGGTGGAAGAGGTGGCAGAGGTGGTCGCGGAAGAGGTGGTGGTGGCAGGGGGCGTGGTACGCCCAATAGACCAAGTCTTGCTGCTGCAGGCACAGGGACAAAGACCACATTCGAGGACGATGATTAA | 2322 | 0.4496 | MGKSSKKSAPKVDPAPAVVPPLKSAKKGKREAEDELEKHVSAKKQKRDEVAEKKNAKVQKNKKESSSDDSSSSDSEEDKKTAPKAVLPSKTQLSKNGALSGRVNKGKPASSSSSSESSDDESDSDDAGKTKVASAAGKNGALTKKKVESSDSSDTDSSSDEENDVRTKVAPLSKKVPVSATKKVESDSESDSSSDEDDVPTKSSKKLLAAPAAGKSMPAKKIGSSDDTASDSSSDDDDLTTRVPAASKKLPATAVPSKKKVESSESTDDESSESSDEDNGMKSSVKAVPKPSNTRKKAESSESSDSDSSSSEEDTKNKKGSNIASNKKPERASEKISKLKESSDETDSDDEEESSDSDSEDEKKTVPKASAKAAAAVKTAKGEPSESSSEDDSSEDEKTAPQAHIKASAGVKTVKKESSDSSSEDDSSEDEDKMDVDEESEEEPPKKKSQKVSKESNENSESSDDSEDDDDETPSKTRKYAKDLEMVDAASAKSNGKKTPSTPATPKVQNVASKSLFVGNLSFKVSRADVEDFFKDCGEVVDVRLASDENGRFKGFGHVEFATEEAAQNALELNGEELLQRPVRLDLARERGAYTPSSGNFSNAFQKGGQAQVHTIFIKGFDASQGEDVIKTNLKEHFSCGEITRISIPKDYDSGAVKGYAYIDFKDVDAFNKALELNGSELGGGYYLTVDEAKPRVDNQGASGGRGGGRSGGRGGRGGGGQFGGRGGGGQFGGRGGRGGRGRGGGGRGRGTPNRPSLAAAGTGTKTTFEDDD | 773 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Prci10g3052 | 773 | MobiDBLite | consensus disorder prediction | 423 | 439 | - | - | |
Prci10g3052 | 773 | MobiDBLite | consensus disorder prediction | 144 | 169 | - | - | |
Prci10g3052 | 773 | MobiDBLite | consensus disorder prediction | 292 | 344 | - | - | |
Prci10g3052 | 773 | Gene3D | - | 488 | 599 | IPR012677 | - | |
Prci10g3052 | 773 | MobiDBLite | consensus disorder prediction | 1 | 507 | - | - | |
Prci10g3052 | 773 | FunFam | Nucleolin 2 | 488 | 598 | - | - | |
Prci10g3052 | 773 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 516 | 583 | IPR000504 | GO:0003723 | |
Prci10g3052 | 773 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 627 | 684 | IPR000504 | GO:0003723 | |
Prci10g3052 | 773 | MobiDBLite | consensus disorder prediction | 24 | 84 | - | - | |
Prci10g3052 | 773 | MobiDBLite | consensus disorder prediction | 696 | 773 | - | - | |
Prci10g3052 | 773 | MobiDBLite | consensus disorder prediction | 87 | 117 | - | - | |
Prci10g3052 | 773 | Coils | Coil | 22 | 63 | - | - | |
Prci10g3052 | 773 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 514 | 590 | IPR000504 | GO:0003723 | |
Prci10g3052 | 773 | Gene3D | - | 602 | 732 | IPR012677 | - | |
Prci10g3052 | 773 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H | 331 | 658 | - | - | |
Prci10g3052 | 773 | SUPERFAMILY | RNA-binding domain, RBD | 610 | 727 | IPR035979 | GO:0003676 | |
Prci10g3052 | 773 | MobiDBLite | consensus disorder prediction | 472 | 486 | - | - | |
Prci10g3052 | 773 | MobiDBLite | consensus disorder prediction | 180 | 203 | - | - | |
Prci10g3052 | 773 | SUPERFAMILY | RNA-binding domain, RBD | 504 | 605 | IPR035979 | GO:0003676 | |
Prci10g3052 | 773 | CDD | RRM2_NUCLs | 615 | 693 | IPR034350 | - | |
Prci10g3052 | 773 | SMART | rrm1_1 | 615 | 691 | IPR000504 | GO:0003723 | |
Prci10g3052 | 773 | SMART | rrm1_1 | 515 | 586 | IPR000504 | GO:0003723 | |
Prci10g3052 | 773 | MobiDBLite | consensus disorder prediction | 384 | 402 | - | - | |
Prci10g3052 | 773 | CDD | RRM1_NUCLs | 515 | 591 | IPR034349 | - | |
Prci10g3052 | 773 | MobiDBLite | consensus disorder prediction | 440 | 460 | - | - | |
Prci10g3052 | 773 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 614 | 695 | IPR000504 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Prci10g3052 | Prci-Chr10 | 39048399 | 39054994 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Prci10g3052 | 515 | 688 | Eukaryotic Initiation Factors Gene Family | AT1G22760 | 32.240 | 2.45e-12 | 68.6 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Prci10g3052 | K11294 | - | nnu:104592315 | 450.284 |