Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g3052 ATGGGCAAATCCAGCAAGAAATCAGCTCCCAAGGTTGACCCTGCTCCGGCTGTTGTTCCGCCTTTGAAGTCTGCAAAGAAAGGCAAGAGGGAAGCTGAGGATGAACTTGAGAAGCACGTGAGTGCAAAGAAGCAGAAGAGAGATGAAGTTGCTGAGAAGAAGAATGCCAAGGTGCAGAAAAACAAGAAGGAAAGTAGTTCAGATGATTCCTCTTCATCAGATTCTGAGGAAGACAAGAAAACAGCCCCAAAAGCTGTTCTTCCATCGAAGACACAACTTTCTAAGAATGGTGCTCTAAGTGGCCGGGTGAACAAAGGCAAGCCAGCTAGTAGTTCCAGTTCTTCTGAATCCTCTGACGATGAGTCCGACAGTGATGATGCTGGAAAAACCAAGGTAGCCTCTGCTGCTGGCAAGAATGGAGCTCTGACAAAGAAGAAAGTTGAGTCTAGTGACAGCTCTGATACTGATAGCAGCTCAGATGAAGAAAATGATGTGAGAACTAAAGTTGCCCCGCTATCCAAAAAGGTACCTGTTTCTGCCACTAAGAAAGTTGAATCAGACTCGGAATCTGACAGCAGCTCTGATGAGGATGATGTCCCTACTAAATCATCCAAGAAGTTGTTGGCTGCTCCTGCTGCAGGTAAAAGTATGCCTGCCAAAAAAATTGGGTCAAGTGATGACACAGCCTCAGATAGTAGCTCAGATGATGATGATCTAACGACAAGGGTACCTGCTGCATCAAAGAAGTTGCCTGCTACAGCAGTTCCTTCAAAGAAAAAAGTTGAGAGCAGTGAAAGCACCGATGATGAATCAAGTGAGAGCTCTGATGAAGATAATGGTATGAAGTCTTCTGTCAAAGCAGTTCCCAAGCCTTCCAATACTCGAAAGAAGGCTGAATCAAGTGAGAGCTCAGATTCTGATAGCAGTAGCTCTGAGGAAGACACCAAAAATAAAAAAGGATCCAACATTGCTTCCAATAAGAAGCCAGAAAGGGCTTCTGAGAAGATTTCCAAGTTAAAGGAAAGTTCTGATGAGACTGATTCTGATGACGAGGAGGAGTCCTCTGACAGTGATTCTGAGGATGAGAAGAAAACTGTTCCTAAGGCTAGTGCTAAAGCAGCTGCTGCAGTGAAGACAGCTAAAGGGGAACCTAGTGAAAGTTCATCTGAAGATGACTCTTCAGAAGATGAGAAAACTGCGCCCCAGGCTCATATCAAAGCATCTGCTGGTGTGAAGACAGTTAAAAAGGAGTCTAGTGATAGCTCATCTGAAGATGACTCTTCTGAAGATGAGGATAAGATGGATGTTGATGAAGAAAGCGAGGAGGAGCCACCAAAGAAAAAGTCTCAAAAAGTTTCAAAGGAAAGCAATGAAAATTCAGAGAGCTCAGATGATAGCGAAGATGATGATGATGAGACACCTTCCAAGACTCGGAAATATGCTAAGGATTTGGAGATGGTTGATGCTGCATCGGCAAAGTCAAATGGAAAGAAAACTCCTAGCACCCCTGCTACTCCAAAAGTACAGAATGTGGCATCAAAGTCACTATTTGTTGGAAATTTGTCATTTAAAGTATCACGGGCTGATGTGGAAGACTTCTTTAAAGATTGTGGAGAAGTGGTTGATGTCCGTTTGGCCTCAGATGAAAATGGGAGATTTAAAGGTTTTGGGCATGTCGAATTTGCCACAGAAGAAGCCGCACAAAATGCCCTTGAGTTGAATGGGGAAGAATTGCTTCAGCGTCCTGTCAGACTTGATTTGGCTCGTGAAAGGGGAGCCTATACCCCTTCTAGCGGCAACTTTAGCAATGCATTCCAGAAAGGAGGACAAGCTCAAGTGCATACAATATTTATCAAGGGTTTTGATGCATCCCAAGGGGAAGATGTGATTAAAACAAACCTCAAAGAGCATTTCAGTTGTGGAGAGATTACAAGGATATCAATTCCTAAAGATTATGATAGTGGAGCTGTCAAGGGGTATGCCTACATTGATTTCAAGGATGTTGATGCCTTCAACAAAGCGCTAGAATTGAATGGTAGTGAGCTTGGAGGTGGTTATTATTTGACAGTTGATGAGGCAAAACCTCGAGTTGATAATCAAGGTGCAAGTGGTGGTAGAGGTGGTGGAAGGAGTGGTGGTAGAGGCGGAAGAGGTGGCGGCGGGCAATTTGGTGGAAGAGGTGGTGGCGGTCAATTTGGTGGAAGAGGTGGCAGAGGTGGTCGCGGAAGAGGTGGTGGTGGCAGGGGGCGTGGTACGCCCAATAGACCAAGTCTTGCTGCTGCAGGCACAGGGACAAAGACCACATTCGAGGACGATGATTAA 2322 0.4496 MGKSSKKSAPKVDPAPAVVPPLKSAKKGKREAEDELEKHVSAKKQKRDEVAEKKNAKVQKNKKESSSDDSSSSDSEEDKKTAPKAVLPSKTQLSKNGALSGRVNKGKPASSSSSSESSDDESDSDDAGKTKVASAAGKNGALTKKKVESSDSSDTDSSSDEENDVRTKVAPLSKKVPVSATKKVESDSESDSSSDEDDVPTKSSKKLLAAPAAGKSMPAKKIGSSDDTASDSSSDDDDLTTRVPAASKKLPATAVPSKKKVESSESTDDESSESSDEDNGMKSSVKAVPKPSNTRKKAESSESSDSDSSSSEEDTKNKKGSNIASNKKPERASEKISKLKESSDETDSDDEEESSDSDSEDEKKTVPKASAKAAAAVKTAKGEPSESSSEDDSSEDEKTAPQAHIKASAGVKTVKKESSDSSSEDDSSEDEDKMDVDEESEEEPPKKKSQKVSKESNENSESSDDSEDDDDETPSKTRKYAKDLEMVDAASAKSNGKKTPSTPATPKVQNVASKSLFVGNLSFKVSRADVEDFFKDCGEVVDVRLASDENGRFKGFGHVEFATEEAAQNALELNGEELLQRPVRLDLARERGAYTPSSGNFSNAFQKGGQAQVHTIFIKGFDASQGEDVIKTNLKEHFSCGEITRISIPKDYDSGAVKGYAYIDFKDVDAFNKALELNGSELGGGYYLTVDEAKPRVDNQGASGGRGGGRSGGRGGRGGGGQFGGRGGGGQFGGRGGRGGRGRGGGGRGRGTPNRPSLAAAGTGTKTTFEDDD 773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g3052 773 MobiDBLite consensus disorder prediction 423 439 - -
Prci10g3052 773 MobiDBLite consensus disorder prediction 144 169 - -
Prci10g3052 773 MobiDBLite consensus disorder prediction 292 344 - -
Prci10g3052 773 Gene3D - 488 599 IPR012677 -
Prci10g3052 773 MobiDBLite consensus disorder prediction 1 507 - -
Prci10g3052 773 FunFam Nucleolin 2 488 598 - -
Prci10g3052 773 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 516 583 IPR000504 GO:0003723
Prci10g3052 773 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 627 684 IPR000504 GO:0003723
Prci10g3052 773 MobiDBLite consensus disorder prediction 24 84 - -
Prci10g3052 773 MobiDBLite consensus disorder prediction 696 773 - -
Prci10g3052 773 MobiDBLite consensus disorder prediction 87 117 - -
Prci10g3052 773 Coils Coil 22 63 - -
Prci10g3052 773 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 514 590 IPR000504 GO:0003723
Prci10g3052 773 Gene3D - 602 732 IPR012677 -
Prci10g3052 773 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 331 658 - -
Prci10g3052 773 SUPERFAMILY RNA-binding domain, RBD 610 727 IPR035979 GO:0003676
Prci10g3052 773 MobiDBLite consensus disorder prediction 472 486 - -
Prci10g3052 773 MobiDBLite consensus disorder prediction 180 203 - -
Prci10g3052 773 SUPERFAMILY RNA-binding domain, RBD 504 605 IPR035979 GO:0003676
Prci10g3052 773 CDD RRM2_NUCLs 615 693 IPR034350 -
Prci10g3052 773 SMART rrm1_1 615 691 IPR000504 GO:0003723
Prci10g3052 773 SMART rrm1_1 515 586 IPR000504 GO:0003723
Prci10g3052 773 MobiDBLite consensus disorder prediction 384 402 - -
Prci10g3052 773 CDD RRM1_NUCLs 515 591 IPR034349 -
Prci10g3052 773 MobiDBLite consensus disorder prediction 440 460 - -
Prci10g3052 773 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 614 695 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g3052 Prci-Chr10 39048399 39054994 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g3052 515 688 Eukaryotic Initiation Factors Gene Family AT1G22760 32.240 2.45e-12 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g3052 K11294 - nnu:104592315 450.284