Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g3051 ATGGGCAAATCCAGCAAGAAATCAGCTCCCAAGGTTGACCCTGCTCCGGCTGTTGTTCCGCCTTTGAAGTCTGCAAAGAAAGGCAAGAGGGAAGCTGAGGATGAACTTGAGAAGCACGTGAGTGCAAAGAAGCAGAAGAGAGATGAAGTTGCTGAGAAGAAGAATGCCAAGGTGCAGAAAAACAAGAAGGAAAGTAGTTCAGATGATTCCTCTTCATCAGATTCTGAGGAAGACAAGAAAACAGCCCCAAAAGCTGTTCTTCCATCGAAGACACAACTTTCTAAGAATGGTGCTCTAAGTGGCCGGGTGAACAAAGGCAAGCCAGCTAGTAGTTCCAGTTCTTCTGAATCCTCTGACGATGAGTCCGACAGTGATGATGCTGGAAAAACCAAGGTAGCCTCTGCTGCTGGCAAGAATGGAGCTCTGACAAAGAAGAAAGTTGAGTCTAGTGACAGCTCTGATACTGATAGCAGCTCAGATGAAGAAAATGATGTGAGAACTAAAGTTGCCCCGCTATCCAAAAAGGTACCTGTTTCTGCCACTAAGAAAGTTGAATCAGACTCGGAATCTGACAGCAGCTCTGATGAGGATGATGTCCCTACTAAATCATCCAAGAAGTTGTTGGCTGCTCCTGCTGCAGGTAAAAGTATGCCTGCCAAAAAAATTGGGTCAAGTGATGACACAGCCTCAGATAGTAGCTCAGATGATGATGATCTAACGACAAGGGTACCTGCTGCATCAAAGAAGTTGCCTGCTACAGCAGTTCCTTCAAAGAAAAAAGTTGAGAGCAGTGAAAGCACCGATGATGAATCAAGTGAGAGCTCTGATGAAGATAATTCTTCTGTCAAAGCAGTTCCCAAGCCTTCCAATACTCGAAAGAAGGCTGAATCAAGTGAGAGCTCAGATTCTGATAGCAGTAGCTCTGAGGAAGACACCAAAAATAAAAAAGGATCCAACATTGCTTCCAATAAGAAGCCAGAAAGGGCTTCTGAGAAGATTTCCAAGTTAAAGGAAAGTTCTGATGAGACTGATTCTGATGACGAGGAGGAGTCCTCTGACAGTGATTCTGAGGATGAGAAGAAAACTGTTCCTAAGGCTAGTGCTAAAGCAGCTGCTGCAGTGAAGACAGCTAAAGGGGAACCTAGTGAAAGTTCATCTGAAGATGACTCTTCAGAAGATGAGAAAACTGCGCCCCAGGCTCATATCAAAGCATCTGCTGGTGTGAAGACAGTTAAAAAGGAGTCTAGTGATAGCTCATCTGAAGATGACTCTTCTGAAGATGAGGATAAGATGGATGTTGATGAAGAAAGCGAGGAGGAGCCACCAAAGAAAAAGTCTCAAAAAGTTTCAAAGGAAAGCAATGAAAATTCAGAGAGCTCAGATGATAGCGAAGATGATGATGATGAGACACCTTCCAAGACTCGGAAATATGCTAAGGATTTGGAGATGGTTGATGCTGCATCGGCAAAGTCAAATGGAAAGAAAACTCCTAGCACCCCTGCTACTCCAAAAGTACAGAATGTGGCATCAAAGTCACTATTTGTTGGAAATTTGTCATTTAAAGTATCACGGGCTGATGTGGAAGACTTCTTTAAAGATTGTGGAGAAGTGGTTGATGTCCGTTTGGCCTCAGATGAAAATGGGAGATTTAAAGGTTTTGGGCATGTCGAATTTGCCACAGAAGAAGCCGCACAAAATGCCCTTGAGTTGAATGGGGAAGAATTGCTTCAGCGTCCTGTCAGACTTGATTTGGCTCGTGAAAGGGGAGCCTATACCCCTTCTAGCGGCAACTTTAGCAATGCATTCCAGAAAGGAGGACAAGCTCAAGTGCATACAATATTTATCAAGGGTTTTGATGCATCCCAAGGGGAAGATGTGATTAAAACAAACCTCAAAGAGCATTTCAGTTGTGGAGAGATTACAAGGATATCAATTCCTAAAGATTATGATAGTGGAGCTGTCAAGGGGTATGCCTACATTGATTTCAAGGATGTTGATGCCTTCAACAAAGCGCTAGAATTGAATGGTAGTGAGCTTGGAGGTGGTTATTATTTGACAGTTGATGAGGCAAAACCTCGAGTTGATAATCAAGGTGCAAGTGGTGGTAGAGGTGGTGGAAGGAGTGGTGGTAGAGGCGGAAGAGGTGGCGGCGGGCAATTTGGTGGAAGAGGTGGTGGCGGTCAATTTGGTGGAAGAGGTGGCAGAGGTGGTCGCGGAAGAGGTGGTGGTGGCAGGGGGCGTGGTACGCCCAATAGACCAAGTCTTGCTGCTGCAGGCACAGGGACAAAGACCACATTCGAGGACGATGATTAA 2313 0.4496 MGKSSKKSAPKVDPAPAVVPPLKSAKKGKREAEDELEKHVSAKKQKRDEVAEKKNAKVQKNKKESSSDDSSSSDSEEDKKTAPKAVLPSKTQLSKNGALSGRVNKGKPASSSSSSESSDDESDSDDAGKTKVASAAGKNGALTKKKVESSDSSDTDSSSDEENDVRTKVAPLSKKVPVSATKKVESDSESDSSSDEDDVPTKSSKKLLAAPAAGKSMPAKKIGSSDDTASDSSSDDDDLTTRVPAASKKLPATAVPSKKKVESSESTDDESSESSDEDNSSVKAVPKPSNTRKKAESSESSDSDSSSSEEDTKNKKGSNIASNKKPERASEKISKLKESSDETDSDDEEESSDSDSEDEKKTVPKASAKAAAAVKTAKGEPSESSSEDDSSEDEKTAPQAHIKASAGVKTVKKESSDSSSEDDSSEDEDKMDVDEESEEEPPKKKSQKVSKESNENSESSDDSEDDDDETPSKTRKYAKDLEMVDAASAKSNGKKTPSTPATPKVQNVASKSLFVGNLSFKVSRADVEDFFKDCGEVVDVRLASDENGRFKGFGHVEFATEEAAQNALELNGEELLQRPVRLDLARERGAYTPSSGNFSNAFQKGGQAQVHTIFIKGFDASQGEDVIKTNLKEHFSCGEITRISIPKDYDSGAVKGYAYIDFKDVDAFNKALELNGSELGGGYYLTVDEAKPRVDNQGASGGRGGGRSGGRGGRGGGGQFGGRGGGGQFGGRGGRGGRGRGGGGRGRGTPNRPSLAAAGTGTKTTFEDDD 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g3051 770 MobiDBLite consensus disorder prediction 144 169 - -
Prci10g3051 770 FunFam Nucleolin 2 485 595 - -
Prci10g3051 770 Gene3D - 413 595 IPR012677 -
Prci10g3051 770 MobiDBLite consensus disorder prediction 437 457 - -
Prci10g3051 770 MobiDBLite consensus disorder prediction 87 117 - -
Prci10g3051 770 MobiDBLite consensus disorder prediction 24 84 - -
Prci10g3051 770 CDD RRM2_NUCLs 612 690 IPR034350 -
Prci10g3051 770 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 611 692 IPR000504 GO:0003723
Prci10g3051 770 SUPERFAMILY RNA-binding domain, RBD 501 602 IPR035979 GO:0003676
Prci10g3051 770 Coils Coil 22 63 - -
Prci10g3051 770 SUPERFAMILY RNA-binding domain, RBD 607 724 IPR035979 GO:0003676
Prci10g3051 770 MobiDBLite consensus disorder prediction 420 436 - -
Prci10g3051 770 Gene3D - 597 729 IPR012677 -
Prci10g3051 770 MobiDBLite consensus disorder prediction 180 203 - -
Prci10g3051 770 MobiDBLite consensus disorder prediction 693 770 - -
Prci10g3051 770 MobiDBLite consensus disorder prediction 1 504 - -
Prci10g3051 770 CDD RRM1_NUCLs 512 588 IPR034349 -
Prci10g3051 770 MobiDBLite consensus disorder prediction 469 483 - -
Prci10g3051 770 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 625 738 - -
Prci10g3051 770 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 511 587 IPR000504 GO:0003723
Prci10g3051 770 SMART rrm1_1 512 583 IPR000504 GO:0003723
Prci10g3051 770 SMART rrm1_1 612 688 IPR000504 GO:0003723
Prci10g3051 770 MobiDBLite consensus disorder prediction 289 341 - -
Prci10g3051 770 MobiDBLite consensus disorder prediction 381 399 - -
Prci10g3051 770 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 513 580 IPR000504 GO:0003723
Prci10g3051 770 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 624 681 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g3051 Prci-Chr10 39048399 39054995 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g3051 512 685 Eukaryotic Initiation Factors Gene Family AT1G22760 32.240 2.43e-12 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g3051 K11294 - nnu:104592315 446.432