Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g3010 ATGCTATCTGATATGGCTGCATCTTCTTCGTCTGCGTCGCTCTTCGGAATTAGAGGAGATCAGGGTCCGATGATGAATCCGCAGCAGCATTCATCGACTCCGAGTTCGTCAACCACCGCAGCTGCACCACCACAAAAGAAGAAGAGAAACCAACCAGGAACACCAAATCCAGACGCAGAGGTGATAGCTCTATCTCCGAAGACTTTAATGGCAACAAACAGGTTCATATGTGAGGTATGCAACAAAGGGTTTCAAAGAGAGCAGAACCTACAGCTTCACAGAAGAGGACACAACCTGCCTTGGAAGCTGAAGCAGAAGACAAACAAAGAGCCAAAGAGAAAGGTATATCTGTGTCCCGAGCCCACATGCGTACACCATGACCCCTCAAGAGCTCTCGGTGACCTCACTGGGATTAAGAAACACTACTCTCGCAAACACGGCGAGAAGAAGTGGAAGTGTGAGAAGTGTTCCAAGAAATACGCGGTTCAATCTGATTGGAAGGCACATTCTAAGACTTGTGGTACCAGAGAATACAGGAGAGACAGTTTTATCACCCACAGGGCGTTTTGTGATGCACTGGCTCAAGAAAGTGCGAGACAACCATCCGACTTGATTAGCAGCGCCATTAATGGGAGCCAGCTCTATGAAAGTAACAACTTGGCGGCTTTAGGCTTGTCTCAGGTGGCCTCCCACATCTCTGGTGCCGTCCATGATCACCACCCCAGCAACCAAATAGCCGGCGACATCTTGCGACTCGGTGGCACTGCTCGGACAGGCCAATTCGACCACCTTCTTCCACCTTCCTTAATTAGACCGCCACCGCCGCAGATGGCTGCTGCGGCCAATGTTGCTTCTCCTCCGGTCTTCTTCATGACGGAACAATCAAACCAAAACTATCACCACCATGATCACCATCATCAGCAAAACAAGCAATTCCATGGACTCATGCAATTCTCTGACCTTCATCACAATAATAGCAACAATTCTCCAACGGCTGCGCCTAATAACACCAACCTCTTCAACCTTCCTCCGTTCCTTTCCAACACTGCCAACAACAATAACAGTCCTTTGTCCGAAAGCGCCGCTACCGGAGGAGGACAAATCGACGGCCCCAACAGCTTCTTCTCCGACCAAATCACAAGCTCCAGTGCTCCTTCTCTTTTCAGCACATCTCTTCAGAACAACAGTAACAGCAGCAGCTTTCCTCCCATGTCTGCAACAGCACTGCTTCAAAAGGCTGCTCAGATCGGTGCGAATTCTAGCAACAACAGCGCCACGGCCTCGCTACTCAGAAGCTTCGGAAGCTCTTCCTCCACCACCGGCTCCAAGTCTGATCATCAACACCACAGGCCACCGCAGCAGCTGGTCGGAGCAAACTATGGCGCCATTTTTGGAGGGTCGTCGACGTCGACGTCGACGAACAACGATGGTCAGAACGGCAATCTGCAAGACTTGATGAACGCATTCAGTTCTGTTGGCGGGTATGAAGGATACGATCATCGTCATCATCAACAACAACAGCAAAACAGCTCAAACACAAGAGACCTGAAACTGCCCGCGGGATCTGACAGGCTCACTCGAGATTTTCTTGGGGTTGGGCAGATTGTGAGAACCATGAGTGGAGGAATTTCGCCCGGAGATCATCATCAGCAGCAGCAGCAACAAGGGTTCATGAACTTGGGCTCGTTGGAGACTCACAGAAATAATAATAATGCTGCGGCGCCGTCAGGCCAATCTTTTGGAAGCGGAGGGAATTTTCAGTGA 1764 0.5034 MLSDMAASSSSASLFGIRGDQGPMMNPQQHSSTPSSSTTAAAPPQKKKRNQPGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTNKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRRDSFITHRAFCDALAQESARQPSDLISSAINGSQLYESNNLAALGLSQVASHISGAVHDHHPSNQIAGDILRLGGTARTGQFDHLLPPSLIRPPPPQMAAAANVASPPVFFMTEQSNQNYHHHDHHHQQNKQFHGLMQFSDLHHNNSNNSPTAAPNNTNLFNLPPFLSNTANNNNSPLSESAATGGGQIDGPNSFFSDQITSSSAPSLFSTSLQNNSNSSSFPPMSATALLQKAAQIGANSSNNSATASLLRSFGSSSSTTGSKSDHQHHRPPQQLVGANYGAIFGGSSTSTSTNNDGQNGNLQDLMNAFSSVGGYEGYDHRHHQQQQQNSSNTRDLKLPAGSDRLTRDFLGVGQIVRTMSGGISPGDHHQQQQQQGFMNLGSLETHRNNNNAAAPSGQSFGSGGNFQ 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g3010 587 Gene3D Classic Zinc Finger 72 172 - -
Prci10g3010 587 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 30 550 IPR031140 -
Prci10g3010 587 SUPERFAMILY beta-beta-alpha zinc fingers 74 171 IPR036236 -
Prci10g3010 587 MobiDBLite consensus disorder prediction 24 52 - -
Prci10g3010 587 ProSitePatterns Zinc finger C2H2 type domain signature. 77 97 IPR013087 -
Prci10g3010 587 SMART c2h2final6 116 146 IPR013087 -
Prci10g3010 587 SMART c2h2final6 75 97 IPR013087 -
Prci10g3010 587 SMART c2h2final6 151 171 IPR013087 -
Prci10g3010 587 ProSiteProfiles Zinc finger C2H2 type domain profile. 75 97 IPR013087 -
Prci10g3010 587 MobiDBLite consensus disorder prediction 563 587 - -
Prci10g3010 587 MobiDBLite consensus disorder prediction 430 521 - -
Prci10g3010 587 MobiDBLite consensus disorder prediction 463 488 - -
Prci10g3010 587 MobiDBLite consensus disorder prediction 1 16 - -
Prci10g3010 587 MobiDBLite consensus disorder prediction 1 60 - -
Prci10g3010 587 Pfam Zinc-finger double-stranded RNA-binding 75 97 IPR022755 -
Prci10g3010 587 MobiDBLite consensus disorder prediction 321 376 - -
Prci10g3010 587 FunFam protein indeterminate-domain 12-like 54 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g3010 Prci-Chr10 38616993 38623020 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g3010 45 541 IDZ Gene Family AT2G02070 47.028 1.33e-122 373
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Prci10g3010 zf-C2H2_jaz 3.6e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g3010 K25870 - gmx:100786121 524.628