Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g2980 ATGCACTTCACCATGACTCTCCCAAAACCACCCTCTCCGGATATCTCCCTTCTCTCCTCTACTTTTTCTGCTTCTCGCTTTCCCACCCCCTCTCTTCCCAGATTGAGTATGCCGGAGAAGGCCATGCCCAAGGAGGCGGCCTACCGGAACATTCACCATGAGCTGCGGCTGGATGCCAATCCCAAGCTGAACCTGGCATCTTTCGTGACGACTTCCATGGAGGAAGAATGCAACCAGCTCATCATGGAATCCATTAACAAGAACTACGTTGACATGGACCAGTACCCCGTCACCGCCGACCTTCACAATCGATGCGTGAACATGTTGGCAAGATTGTTCCATGCTCCGATGGGAGAGAATGAGAGCGGAGTCGGAGTGGGCACGGTTGGATCGTCCGAAGCCATCATGCTGGCAGGGCTTGCTTTCAAGAAGAGATGGCAAAACGCGAGGAAGGCTCAAGGCAAGCCTTTCGACAGGCCTAACATCGTAACTGGTTCCAATGTCCAGGTGTGTTGGGAGAAATTTGCAAGGTATTTCGACGTGGGGCTGAAGGAAGTGAACGTGAAGGAAGGGTACTACGTGATGGACCCAGCAAGAGCGGTGGAGATGGTGGACGAAAACACCATCTGTGTGGCAGCAATTCTGGGTTCTACTTACAATGGCGAATTTGAAGATGTCAAGCTCTTGAACGACCTCCTTCTCCACAAGAACAAACAAACTGGATGGGAGACGCCGATTCATGTGGATGCAGCGAGTGGAGGGTTTATAGCGCCATTTTTATACCCGGAGCTAGAGTGGGATTTCAGGCTGCCATTGGTGAAGAGTATAAATGTGAGCGGCCACAAATATGGACTGGTTTATGCTGGCATTGGTTGGGTCCTTTGGAGGACCCAACAAGACTTGCCACAAGACCTTGTCTTCCACATCAATTACCTCGGAGCTGATCAGCCCACCTTCACCCTCAATTTTTCCAAAGGTTCTAGCCCGATTATCGCCCAGTATTATCAGTTAATTCGCTTGGGCAAAGAGGGCTACCGTAATGTGATGGAGAAATGTAGAGAAAACGCCATGGTGGTGAAAGAAGGAATATTAGAGACAGGATGCTTCAACATAGTCTCAAAGGACGAGGGTGTTCCTGTGGTGGCATTCTCTCTCAAGGACCGAAGCCGGCACGACGAGTTCAAGATCTCGGCCATGCTTCGCCGGCACGGGTGGGTTGTGCCGGCGTACCCGATGCCACCCGGTGCTGAGCACATCAACGTGCTCCGAGTAGTGATAAGGGAGGATTTGTCTCGCGCGCTGGCCGAACGCCTCGTGATGGACATCACGAATGTGTTGCATGAACGTGAAATGCTTCCTCAAAACATGTCCACTGTTGAACAAGGTATTAATTCTGCTAACAACATTAATGTGAAGGAACATGATCGCATTGAAGCAGCAGTGAAGAGGACTGCCTTGGATGCCCGAAGGCGAATCATTGCTCAAGAAGCTAGCAAGCGCCAAAAAATCTTAGCAGCCTAG 1521 0.5089 MHFTMTLPKPPSPDISLLSSTFSASRFPTPSLPRLSMPEKAMPKEAAYRNIHHELRLDANPKLNLASFVTTSMEEECNQLIMESINKNYVDMDQYPVTADLHNRCVNMLARLFHAPMGENESGVGVGTVGSSEAIMLAGLAFKKRWQNARKAQGKPFDRPNIVTGSNVQVCWEKFARYFDVGLKEVNVKEGYYVMDPARAVEMVDENTICVAAILGSTYNGEFEDVKLLNDLLLHKNKQTGWETPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVLWRTQQDLPQDLVFHINYLGADQPTFTLNFSKGSSPIIAQYYQLIRLGKEGYRNVMEKCRENAMVVKEGILETGCFNIVSKDEGVPVVAFSLKDRSRHDEFKISAMLRRHGWVVPAYPMPPGAEHINVLRVVIREDLSRALAERLVMDITNVLHEREMLPQNMSTVEQGINSANNINVKEHDRIEAAVKRTALDARRRIIAQEASKRQKILAA 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g2980 506 NCBIfam glutamate decarboxylase 24 447 IPR010107 GO:0004351|GO:0006536|GO:0030170
Prci10g2980 506 SUPERFAMILY PLP-dependent transferases 25 448 IPR015424 -
Prci10g2980 506 Gene3D - 71 364 IPR015421 GO:0003824
Prci10g2980 506 FunFam Glutamate decarboxylase 71 365 - -
Prci10g2980 506 Pfam Pyridoxal-dependent decarboxylase conserved domain 38 386 IPR002129 GO:0016830|GO:0019752|GO:0030170
Prci10g2980 506 Gene3D - 366 451 - -
Prci10g2980 506 PANTHER GLUTAMATE DECARBOXYLASE 19 494 IPR010107 GO:0004351|GO:0006536|GO:0030170
Prci10g2980 506 FunFam Glutamate decarboxylase 366 453 - -
Prci10g2980 506 CDD DOPA_deC_like 64 442 - -
Prci10g2980 506 Gene3D - 10 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g2980 Prci-Chr10 38348739 38351311 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g2980 14 494 Calmodulin-binding Proteins AT5G17330 72.765 0.0 731
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g2980 K01580 - gmx:100782330 764.222