Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g2967 ATGTCTGCTGCTTCCTCGTCTTCACCGTTCTTCGGAATCAGAGAAGAAAACCCAATTCAGATGACACAACAGCATCATCAATCCTCCACAGCTGCTTCCTCGACTGCTCCAAACACAGTAGTTCCTCAAAAGAAACGAAGGAATCAACCTGGAACACCAAATCCAGATGCGGAGGTGATAGCTCTATCTCCAAAGACTTTAATGGCGACAAACAGATTCATATGTGAGGTATGCAACAAAGGGTTTCAGAGAGAGCAGAACCTACAGCTTCACAGAAGAGGACACAACCTTCCCTGGAAGCTGAAGCAGAAGACAAACAAAGAGCCAAAGAGAAAGGTTTATCTGTGTCCCGAGCCTACATGCGTCCACCATGACCCTTCAAGAGCTCTCGGTGACCTCACTGGGATTAAGAAACACTACTCTCGCAAACACGGCGAGAAGAAGTGGAAGTGCGAGAAGTGTTCCAAGAAATACGCTGTTCAATCTGATTGGAAGGCACATTCTAAGACTTGTGGCACCAGAGAATACAGATGCGACTGTGGCACTCTCTTCTCCAGACGTGACAGTTTCATCACTCACAGAGCCTTCTGTGATGCCCTAGCACAGGAGAGTGCAAGGAACCCGACAACCTTAAACCCTATGAGCGCTCATAATCTTTATGGCACAAACTACCAGCAAGTTGCGGGTTCCACGATGTCGCACCATCTTCATCATCAAAATCTTCACGCTCCTGCAACAAACCCTAATACCAGTATCTTGCGTCTAGGCAATGCCAATGCAGCCAAGTTCGAGCCCAGCTTAATCTCTCCCTCTTCAAACCCATCAATGCCAAATAATTCCTCGGCTTTTTTCATGACAGATCCCATTCCTAACCAAGGATTTCATCAAGAACATCATCATCATCATCATCCATCTCAGCAGCAAGCAGCATTTTCGTCTTCAAGCAAGGCTTCGTCTATACATGGTCTCATGCAGCTTCCTGATCTTCAAGGAAACCCTAGTAACAACAACAGTTCGTCCAATCCTTTTAATCTAGGTTTCTTCCCTAATAACAGTATGATCTCTGATCAGTTCAGTAACCCTATTGGCGATCATCACCATGTTGGGTCTGGTTTAGCTTCGTCAGTGCTCTTCGGCAACTCGATCGACGACGTTTCTCCAGCGGCGGCGCATATGTCTGCAACTGCATTGCTTCAGAAAGCTGCTCAAATGGGTTCCACCACAACCACGTCGAATAACGGCTCTTCCTCGTTACTCAGAGGAATGGGTTGTTCTTCAACCAATAATAACAGTGGTGCTAAGTCGGATAATCTCGCCACTTTTGGAAGTGACGTTACAGAAAACGACCATCATCAGCATCTTCGAGGGCTGATGAACTCTCTTGCTAATGGGAACCATTCCATATTTGGAAATGTGCAAGCAGTAGGGAATGATCATCAGGCTAATAGTCTGCAACAGAATCTGGGTGTTAGCTTTGGAGGTTCTGATAAGTTAACGTTGGACTTTCTGGGGGTCGGAGGAATGGTGAGAAACATGAACGGTGGATTTTCCCAGAGATCAGAATCTCAACAACATGGAAGCATCAACATGAGTTCGCCTTTGGAACCTGAACAGGCAAGCCAAACTTTCAGAAGCACGACGCTGCAATGA 1650 0.463 MSAASSSSPFFGIREENPIQMTQQHHQSSTAASSTAPNTVVPQKKRRNQPGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTNKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARNPTTLNPMSAHNLYGTNYQQVAGSTMSHHLHHQNLHAPATNPNTSILRLGNANAAKFEPSLISPSSNPSMPNNSSAFFMTDPIPNQGFHQEHHHHHHPSQQQAAFSSSSKASSIHGLMQLPDLQGNPSNNNSSSNPFNLGFFPNNSMISDQFSNPIGDHHHVGSGLASSVLFGNSIDDVSPAAAHMSATALLQKAAQMGSTTTTSNNGSSSLLRGMGCSSTNNNSGAKSDNLATFGSDVTENDHHQHLRGLMNSLANGNHSIFGNVQAVGNDHQANSLQQNLGVSFGGSDKLTLDFLGVGGMVRNMNGGFSQRSESQQHGSINMSSPLEPEQASQTFRSTTLQ 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g2967 549 ProSiteProfiles Zinc finger C2H2 type domain profile. 73 95 IPR013087 -
Prci10g2967 549 SMART c2h2final6 149 169 IPR013087 -
Prci10g2967 549 SMART c2h2final6 73 95 IPR013087 -
Prci10g2967 549 SMART c2h2final6 114 144 IPR013087 -
Prci10g2967 549 MobiDBLite consensus disorder prediction 514 549 - -
Prci10g2967 549 FunFam protein indeterminate-domain 12-like 52 120 - -
Prci10g2967 549 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 18 521 IPR031140 -
Prci10g2967 549 Pfam Zinc-finger double-stranded RNA-binding 73 95 IPR022755 -
Prci10g2967 549 MobiDBLite consensus disorder prediction 264 287 - -
Prci10g2967 549 Gene3D Classic Zinc Finger 127 206 - -
Prci10g2967 549 MobiDBLite consensus disorder prediction 264 317 - -
Prci10g2967 549 MobiDBLite consensus disorder prediction 1 58 - -
Prci10g2967 549 ProSitePatterns Zinc finger C2H2 type domain signature. 75 95 IPR013087 -
Prci10g2967 549 Gene3D Classic Zinc Finger 52 121 - -
Prci10g2967 549 FunFam protein indeterminate-domain 5, chloroplastic-like 127 206 - -
Prci10g2967 549 SUPERFAMILY beta-beta-alpha zinc fingers 72 169 IPR036236 -
Prci10g2967 549 MobiDBLite consensus disorder prediction 1 50 - -
Prci10g2967 549 MobiDBLite consensus disorder prediction 406 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g2967 Prci-Chr10 38233997 38238462 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g2967 43 514 IDZ Gene Family AT2G02070 49.527 2.14e-126 381
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Prci10g2967 zf-C2H2_jaz 3.3e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g2967 K25870 - tcc:18609936 568.54