Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g2898 ATGGCACAAACCAGCCGAAGCTCTAGATCTTGGGTCGATGGTATTTACTGGAACCATTTCAAATTCACGCATTTTGCCCATCGTCTCCCTCCCGGTTTTGATCAACACCTTGCACTTCCCAAAAGGTTTTCAGATAGCTTGAAAAGGAAATTGCCAGATAATGTGACACTTAAAGGTCCTGGTGGTGCTGAGTGGACTGTCAGATTGTCAACTAGAGATGACGTATTGCACTTCACAGATGGCTGGCAACAATTTGCGCAAGATCACTTTTTGGAAGAGAGTGATCTCCTGATCTTCAAGTACAATGGTGAATCACAGTTTGATGTTCTAATATTTGACCAGAAGAACTTATGTGAGAAGGTAGCTTCTTATTTTGTTCGGGACAGTGGGCTTACAAATAAGAGAAACAAAGATAACTGTTTGGAAGAAGAAAATATCCCTTCTGATAGCAAAGTAAAAGTGGCTTCGCCTAAGAAATCTGCACATGGTAAAAGTAAAAAGACTCGGAAAGCTACTGTGGAACGCACCCCTGCCCAGCAAACTAAGCGGAGAGGAAGATCTAACCGATCTGATGCTCATGCTGGAGAAATTGACTGGCTTCCTGATGTTGAACCTGCATCCACGAGCAGAAATAAGATGGTTGAAGTAGTAGATGCTTCAAGCAGAAGGGCTATGATAGATAATGCGAAGAAGAATACCCTCCAATTGGCTCAAGCGGCATGCACCCCAGATGGCTTCTATGTAGTCATGCGACCCTCGCACGTATACAGGAGATTCTATGTGACAATCCCTACCAAGTGGATGACAGAGCATTTTCCTCTACAATCTGAAGATGTGATATTACGTGTGGGAGAGAGCGAATGGCTTGCTAAATATACCTTTGAAGCCACTCGTCACACCGGTGGACTGGCCAGTGGGTGGAAACAGTTTGCTGTGGACAATAACCTGCAAGAATTTGATGTTTGTGTGTTTAACCTAGCAGGGTTAGGCAAGAAGCCACTGACCCTGGAAGTGAAAATATTTAGAGTTGATGTGTAG 1038 0.4393 MAQTSRSSRSWVDGIYWNHFKFTHFAHRLPPGFDQHLALPKRFSDSLKRKLPDNVTLKGPGGAEWTVRLSTRDDVLHFTDGWQQFAQDHFLEESDLLIFKYNGESQFDVLIFDQKNLCEKVASYFVRDSGLTNKRNKDNCLEEENIPSDSKVKVASPKKSAHGKSKKTRKATVERTPAQQTKRRGRSNRSDAHAGEIDWLPDVEPASTSRNKMVEVVDASSRRAMIDNAKKNTLQLAQAACTPDGFYVVMRPSHVYRRFYVTIPTKWMTEHFPLQSEDVILRVGESEWLAKYTFEATRHTGGLASGWKQFAVDNNLQEFDVCVFNLAGLGKKPLTLEVKIFRVDV 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g2898 345 ProSiteProfiles B3 DNA-binding domain profile. 246 344 IPR003340 GO:0003677
Prci10g2898 345 CDD B3_DNA 246 342 IPR003340 GO:0003677
Prci10g2898 345 Gene3D - 18 118 IPR015300 -
Prci10g2898 345 ProSiteProfiles B3 DNA-binding domain profile. 22 115 IPR003340 GO:0003677
Prci10g2898 345 Pfam B3 DNA binding domain 36 114 IPR003340 GO:0003677
Prci10g2898 345 Pfam B3 DNA binding domain 246 342 IPR003340 GO:0003677
Prci10g2898 345 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 33 344 IPR044837 -
Prci10g2898 345 CDD B3_DNA 32 113 IPR003340 GO:0003677
Prci10g2898 345 Gene3D - 225 344 IPR015300 -
Prci10g2898 345 SMART B3_2 246 344 IPR003340 GO:0003677
Prci10g2898 345 SMART B3_2 25 115 IPR003340 GO:0003677
Prci10g2898 345 SUPERFAMILY DNA-binding pseudobarrel domain 246 334 IPR015300 -
Prci10g2898 345 SUPERFAMILY DNA-binding pseudobarrel domain 21 114 IPR015300 -
Prci10g2898 345 MobiDBLite consensus disorder prediction 170 198 - -
Prci10g2898 345 MobiDBLite consensus disorder prediction 148 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g2898 Prci-Chr10 37831574 37835101 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g2898 1 342 REM Transcription Factor Family AT4G33280 34.115 2.28e-67 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Prci10g2898 B3 3.3e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g2898 - - pcin:129321207 704.131