Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g2896 ATGGTGAAATCGGCCGACAATGGTTTCGGTTCTGTGGCGCCTTTCCTGAAAAAATGTTATGAGATGGTGGACGATGAGTCGACCGACTCGCTTATATCCTGGAGCAAAAGTAATGACAGTTTTATCATCTGGGACATGACTGAGTTCTCCGTTCGTTTGCTTCCCAAGTATTTCAAGCACAACAATTTCTCCAGTTTCATCAGGCAACTTAATATTTATGGTTTCAGGAAAACTGATACAGATCGCTGGGAATTTGCCAATGATGACTTTATCAGAGGTCAAAAGCATTTACTGAAGAATATATTGAGAAGAAAACATCCACACATTGCATATCAGCAAAAGTCATCACAGCAGCAAGAGAACCGTGATGTGCCTTGTCAAGAAGTTAAAAACCATAACCTATGGAAAGAAGTCGAGAATTTGAAAACTGATAGAAATGCTCTTACACAGGAGTTGGTTAAAGTTAGGCAGCACCAGGAATCATCGAAGAACAAGTTGCTGCTCCTGACAAATCGACTTCACGGAATGGAAAAGAATCAGCAACAGATGTTATCATTCTTAGTCATGGCAATGCAAGTCCCTGGGTTCATGGTCCAGCTGCTTCAGCGCAAGGAAAACGCTTGGCGTACAACTGAGACAAGCAATATGTTGGAACACGGTGTAGAAGATGTTCAACCGGTTGCTTCTGATGGGATGTTAATGAAGTATCAACCACCTTTGAGTGAAAAATTGAAGCCTGTAGTCACACCATCTCTTGTTTCAGATGAGCAACTGGAACCCAATCTCTGTACTGATGGGTTGAAAGATTTCTTCATCAATTCTGACTTCTTGAAGGTCCTCATGGACGAAAAATTGTGTCAAATAGACAATCATTCTCCATTTATTCTACCAGATTCACCTGATGATAATGCCTGGGAACGGCTCCTTTTAGGCAGTCCCTTTGCTGAAAATGCTGAAGATTCAAATCCGGAAAGTGACAGGCCCACCAACAACAGAATGGAGATTGAGCCTGCTATATGTGAAACGCTGACTGATAAATCCCAAAATTGTATTGGGTTGATTCCAGAAATGGACAAAACTCAGAAGAGTGGATGGGAAGTATATGCTAATGATATTCATTTGGAGAAGTTGCAGGGTTTGGAATCTCTAGCCGAGCACATGGAACTCTTGGCTTCTGAAGTAAATTAG 1188 0.4158 MVKSADNGFGSVAPFLKKCYEMVDDESTDSLISWSKSNDSFIIWDMTEFSVRLLPKYFKHNNFSSFIRQLNIYGFRKTDTDRWEFANDDFIRGQKHLLKNILRRKHPHIAYQQKSSQQQENRDVPCQEVKNHNLWKEVENLKTDRNALTQELVKVRQHQESSKNKLLLLTNRLHGMEKNQQQMLSFLVMAMQVPGFMVQLLQRKENAWRTTETSNMLEHGVEDVQPVASDGMLMKYQPPLSEKLKPVVTPSLVSDEQLEPNLCTDGLKDFFINSDFLKVLMDEKLCQIDNHSPFILPDSPDDNAWERLLLGSPFAENAEDSNPESDRPTNNRMEIEPAICETLTDKSQNCIGLIPEMDKTQKSGWEVYANDIHLEKLQGLESLAEHMELLASEVN 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g2896 395 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 7 221 IPR027725 -
Prci10g2896 395 Pfam HSF-type DNA-binding 15 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
Prci10g2896 395 PRINTS Heat shock factor (HSF) domain signature 53 65 IPR000232 GO:0003700|GO:0006355|GO:0043565
Prci10g2896 395 PRINTS Heat shock factor (HSF) domain signature 66 78 IPR000232 GO:0003700|GO:0006355|GO:0043565
Prci10g2896 395 PRINTS Heat shock factor (HSF) domain signature 15 38 IPR000232 GO:0003700|GO:0006355|GO:0043565
Prci10g2896 395 Gene3D - 9 105 IPR036388 -
Prci10g2896 395 SUPERFAMILY "Winged helix" DNA-binding domain 11 104 IPR036390 -
Prci10g2896 395 Coils Coil 138 158 - -
Prci10g2896 395 SMART hsfneu3 11 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
Prci10g2896 395 FunFam Heat shock transcription factor 1 9 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g2896 Prci-Chr10 37807782 37812359 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g2896 1 392 HSF AT1G67970 45.610 1.98e-96 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Prci10g2896 HSF_DNA-bind 5.3e-31 CL0123