Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g2892 ATGCAGCAACCCAGAGCCAATCAACTTCATCTTCTTCCCCGAGATTTTTTTCAATATTTTCCTCATGGATTGAAGATCCTCTATGTTGGCACTGATAACGACATCGGAAGTTTAATTCAGAGAAACCTTGTACAACCTTATTATCATGTCGCTAGGTTTTCCAGTGGTCCTGTTGCCTTAGCACTCTTACGAGATCACAAGCACGGATCTTATGACTTGGTTCTCAGCGATGAGTCGTTAGAACACATGGATGTCTACAACTTCCTCAGGGACCAACACTCAACCACAAGTATTCCGCACGTTGTAATTTCTGGGTGTGAAAGAGTAAGTGGTATGGCGAGAGCATTCAGATACGGTGCGTGTTATGTGTTGAGGAAGCCGGTGAGTGAGTGCGAGCTGAGAAATCTATGGCAGCATGTTTGTCGGAGAAGAGAACTGCCTGAGACGACGGAGACTGATGAGTACGTCAATAGTGACGTGGATGACGAACATCATCAGCAGAATAATTTAGTACGACATAATCGTCAGCGAAATCAGGATCAGGTTTCTTGTAATTCTTCTCTTGTTCCTTGTTCCATAGATAATAGGCTGGGACCCAAAGCAGGAAACGACAGTGAGTTTGTGGATCATGGAGTACTTTCTCAGAGAAAACGACGGGTCGTCTGGACCGCTGAGCTTCATGAAAAGTTTGTAGGAGTGGTGGAACAGCTTGGCTATGATAAGGCGGTGCCAAAACAGATTCTTGAATCGATGGACGTGCCTTTCCTGACGAGAGAAAATGTTGCGAGTCACTTACAGAAATATAGAATCAACAGAAAAGAGAGAGAGGGAGAAGAGATGGAAGAGCTCCAGCGTCGTCTAAATCAACATGGCAAGGCCATCCCCGTGAACCCCGATAGTATTCCTGCTCAACCTCTGTCAGTTGTTCATCAACCCGTGAACCCCCACCTTCTAGAACCTTCCATGAATAATCCTCCTCACCTTCTATATCCTTCCGTGAATCTTATACCAAGTCAAGATCTTGCCTTCTTCTCCCAAGCCCACCAAATGCAAATGCAACCACCTGGGCAAAACTTCAGCTTTGGCCTTCCATCACCTGCATCTCTTGCAAGGCAGCTTCAGCAGCAACAACAAATACGAATACCTAGCTTTTTCTCCTTTGGAGGCCATATGACGCAACAACAGTGCCTAAACCCAAACCCAAACTTGTTTCATGTCCTAATTCCCATGGAGCCGCAATATGTACATCAAAACCTGTCTTCAGGAGGAGACATGCTGCAACAACAGCTAAACTCAAACCAGCTGGCTTCTGGAGGAGATATGTTGCAGCAAAACCTAAACTCAAACGTGGCTCCATGTTCTAATTCCAATGGAAGCAACATGCTGCAGCAACACCTAAACTCAAGCCTGGCTTCTAATTCCAATGGAGGCACTATGCAGCAGCAACAGCAGCAACAGGTAGATCAAAACCTGGCTTCAGGTGATGATGGAATGGTCAAGCAAGAAGTAGCAACAACACTTTTTGGTGGTAATCCTGATCATCCTGATCAGTTTGATCAAGGCCTTTCCTACACTGATGGCTTTTTTGATGAGTTTGAGTTTTACCAATACCTGAAGAGTCCTGAAAATAAAGCATCTGCATCAACGTTGAACGATATCAGTTCAATACCGACACACTTGTGTTCTTGA 1689 0.45 MQQPRANQLHLLPRDFFQYFPHGLKILYVGTDNDIGSLIQRNLVQPYYHVARFSSGPVALALLRDHKHGSYDLVLSDESLEHMDVYNFLRDQHSTTSIPHVVISGCERVSGMARAFRYGACYVLRKPVSECELRNLWQHVCRRRELPETTETDEYVNSDVDDEHHQQNNLVRHNRQRNQDQVSCNSSLVPCSIDNRLGPKAGNDSEFVDHGVLSQRKRRVVWTAELHEKFVGVVEQLGYDKAVPKQILESMDVPFLTRENVASHLQKYRINRKEREGEEMEELQRRLNQHGKAIPVNPDSIPAQPLSVVHQPVNPHLLEPSMNNPPHLLYPSVNLIPSQDLAFFSQAHQMQMQPPGQNFSFGLPSPASLARQLQQQQQIRIPSFFSFGGHMTQQQCLNPNPNLFHVLIPMEPQYVHQNLSSGGDMLQQQLNSNQLASGGDMLQQNLNSNVAPCSNSNGSNMLQQHLNSSLASNSNGGTMQQQQQQQVDQNLASGDDGMVKQEVATTLFGGNPDHPDQFDQGLSYTDGFFDEFEFYQYLKSPENKASASTLNDISSIPTHLCS 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g2892 562 ProSiteProfiles Response regulatory domain profile. 25 141 IPR001789 GO:0000160
Prci10g2892 562 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 181 501 IPR044841 GO:0003700|GO:0006355
Prci10g2892 562 MobiDBLite consensus disorder prediction 468 490 - -
Prci10g2892 562 Gene3D - 214 274 - -
Prci10g2892 562 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 214 273 IPR017930 -
Prci10g2892 562 FunFam Two-component response regulator 214 276 - -
Prci10g2892 562 Pfam Response regulator receiver domain 27 135 IPR001789 GO:0000160
Prci10g2892 562 Pfam Myb-like DNA-binding domain 219 269 IPR001005 -
Prci10g2892 562 Gene3D - 24 178 - -
Prci10g2892 562 SUPERFAMILY CheY-like 22 149 IPR011006 -
Prci10g2892 562 Coils Coil 270 293 - -
Prci10g2892 562 NCBIfam myb-like DNA-binding domain, SHAQKYF class 217 271 IPR006447 GO:0003677
Prci10g2892 562 SUPERFAMILY Homeodomain-like 215 273 IPR009057 -
Prci10g2892 562 SMART REC_2 24 137 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g2892 Prci-Chr10 37758821 37761730 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g2892 20 277 Response Regulator Gene Family AT2G25180 35.249 1.78e-36 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Prci10g2892 Response_reg 1e-07 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g2892 - K14491 pcin:129322626 1088.94