Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g2891 ATGCGTCAAACCGGAGATGACCAATGTCATCTTCTTCCCCCAGATTTTCTTCAACATTTTCCTGAAGGATTGAAGATCCTCTATGTCGGCTCTGATAATTACACCCAAACTTTAATTCACAGAAATCTTCAACGCCCATTTTATTTCATCAGTCCGTATACCAGCGGTCGTATTGCCTTATCACACTTACGAGACAAACATGATTCTTATGACTTGGTTCTCAGTGACGAGTGTCTAGAAGACATGGATGTCCATGACTTTATCATCAGACACAAACACTTGAACACAAATATTCCTAACGTTGTAATATCTGGGAATGAAAGATTAAGTGACATCGTGAAAGCATTCAGATGCGGTGGGTCTTATGTATTGAGGAAGCCAGTGAGTGAGGACGAGCTGATAAATTTATGGCAGCATGTTTGCAGGAAAAAGGAACAAACTGGGACTGAGTTCTTCAAGAGTGACGCTGAAGAAAAACGTCAGCAGAATAAATTAGAACGACGACATTATCCTCATCAGGATGAGGTTTCTAATGATAATTCTTCTCTTCTTCTCAGAGGTAAGAGTCCGCCAGTGGAAGACGACAATGAGTTTGTGAATCGTGGAGAACCTCCTCAGAAGAAACGACGAGTCGTCTGGAGCGCTGACCTCCATAAAAAGTTTGAAAGAGCGGTGGTACAGCTTGGCGTTGACAAGGCAGTGCCAAAACAAATTCTTGAATTGATGAACGTGCCTTATCTGACGAGAGAGCATGTTGCAAGTCACTTACAGAAATATAGACTAAGGAAAGAGAGGGAAGAGCGTCGTAATGGTCAAAATCAACGTGGGGATGGCCATGGAGAAGACAGGCATAGTATTTGCGCTCCACCACCTCTTGCAATTGTTCACCCTAATATTAACATGATGCCTTTTTACCCCAACGAATCACTGCTCCTCCATTTACTCACCAGGCAGTTAAATGGACCGTATTAG 972 0.427 MRQTGDDQCHLLPPDFLQHFPEGLKILYVGSDNYTQTLIHRNLQRPFYFISPYTSGRIALSHLRDKHDSYDLVLSDECLEDMDVHDFIIRHKHLNTNIPNVVISGNERLSDIVKAFRCGGSYVLRKPVSEDELINLWQHVCRKKEQTGTEFFKSDAEEKRQQNKLERRHYPHQDEVSNDNSSLLLRGKSPPVEDDNEFVNRGEPPQKKRRVVWSADLHKKFERAVVQLGVDKAVPKQILELMNVPYLTREHVASHLQKYRLRKEREERRNGQNQRGDGHGEDRHSICAPPPLAIVHPNINMMPFYPNESLLLHLLTRQLNGPY 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g2891 323 NCBIfam myb-like DNA-binding domain, SHAQKYF class 208 263 IPR006447 GO:0003677
Prci10g2891 323 Pfam Response regulator receiver domain 32 135 IPR001789 GO:0000160
Prci10g2891 323 Gene3D - 24 169 - -
Prci10g2891 323 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 181 279 IPR044841 GO:0003700|GO:0006355
Prci10g2891 323 SMART REC_2 24 137 IPR001789 GO:0000160
Prci10g2891 323 MobiDBLite consensus disorder prediction 152 175 - -
Prci10g2891 323 FunFam Two-component response regulator 204 267 - -
Prci10g2891 323 SUPERFAMILY CheY-like 22 149 IPR011006 -
Prci10g2891 323 ProSiteProfiles Response regulatory domain profile. 25 141 IPR001789 GO:0000160
Prci10g2891 323 Gene3D - 205 266 - -
Prci10g2891 323 Pfam Myb-like DNA-binding domain 210 260 IPR001005 -
Prci10g2891 323 MobiDBLite consensus disorder prediction 152 205 - -
Prci10g2891 323 MobiDBLite consensus disorder prediction 190 205 - -
Prci10g2891 323 MobiDBLite consensus disorder prediction 260 289 - -
Prci10g2891 323 MobiDBLite consensus disorder prediction 260 284 - -
Prci10g2891 323 SUPERFAMILY Homeodomain-like 206 265 IPR009057 -
Prci10g2891 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 206 264 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g2891 Prci-Chr10 37744791 37747296 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g2891 58 261 Response Regulator Gene Family AT3G16857 38.009 1.74e-34 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Prci10g2891 Response_reg 2.5e-08 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g2891 - K14491 pcin:129322625 651.744