Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g2779 ATGAGGAAGCCTTGCTGTGATAAGCAAGACATGAACAAAGGAGCTTGGTCTAAACAAGAAGACCAGAAGCTCATCGATTACATCAACAAACATGGCGAGGGCTGCTGGCGTACTCTTCCTCAAGCTGCAGGCTTACTTCGCTGCGGTAAAAGTTGCAGGCTGAGATGGATAAATTATCTAAGGCCAGACCTTAAAAGAGGCAACTTTGCTGAAGATGAAGAAGATCTCATAATCAAGCTTCATGCCCTGCTTGGCAACCGTTGGTCTCTAATTGCTGGAAGATTACCGGGAAGGACTGACAATGAAGTGAAAAATTATTGGAACTCTCATCTAAGAAGAAAGCTCATCAACATGGGAATCGATCCGAATAATCACAGACTGAGTCATAAATTCCCTTCTCTTCAAAACCAAACCACGTCCGGTAGTTCAGCATCATCAGGATTGAAACAAAACAAGGCCGCCAAGAAGAACAACAACAACAATATTATTGATCAGCCAACAAATAAGCCTAAAAATGGTAGTGGTCAAATTAATCATGAACAAGTTTCAGATGCTGCCAGTGGCTTGGAAGATGAGTCCTCTGGCTTGCCTGATCTAAACCTTGATCTCACAATCAACATTCCTTCAACCATACCCACTATCAGTGCTGCTTATGAAGACAACCAAAAGCCAATAATTCATCATGAATCCAAGTCACCAATGAATATGCAACTAGTATCTTCTCCAACCCTTCTTCTATTTCAGTGA 747 0.419 MRKPCCDKQDMNKGAWSKQEDQKLIDYINKHGEGCWRTLPQAAGLLRCGKSCRLRWINYLRPDLKRGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTDNEVKNYWNSHLRRKLINMGIDPNNHRLSHKFPSLQNQTTSGSSASSGLKQNKAAKKNNNNNIIDQPTNKPKNGSGQINHEQVSDAASGLEDESSGLPDLNLDLTINIPSTIPTISAAYEDNQKPIIHHESKSPMNMQLVSSPTLLLFQ 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g2779 248 Pfam Myb-like DNA-binding domain 66 111 IPR001005 -
Prci10g2779 248 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Prci10g2779 248 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 179 - -
Prci10g2779 248 FunFam Transcription repressor MYB4 68 134 - -
Prci10g2779 248 CDD SANT 68 111 IPR001005 -
Prci10g2779 248 MobiDBLite consensus disorder prediction 128 183 - -
Prci10g2779 248 CDD SANT 15 60 IPR001005 -
Prci10g2779 248 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Prci10g2779 248 SMART sant 65 113 IPR001005 -
Prci10g2779 248 SMART sant 12 62 IPR001005 -
Prci10g2779 248 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Prci10g2779 248 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Prci10g2779 248 Gene3D - 13 65 - -
Prci10g2779 248 Gene3D - 68 115 - -
Prci10g2779 248 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Prci10g2779 248 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Prci10g2779 248 MobiDBLite consensus disorder prediction 122 194 - -
Prci10g2779 248 FunFam MYB-related transcription factor 12 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g2779 Prci-Chr10 36198425 36201261 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g2779 2 209 MYB Transcription Factor Family AT4G09460 55.660 1.28e-78 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Prci10g2779 Myb_DNA-binding 1.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g2779 K09422 - rcu:8258211 320.472