Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g2748 ATGCCATTCCGAGATTTTGTTCGTGAGCTCAGGGAAATTCGAGATGGCATGGGTAATATATCTCGAAGAGGGATAGATGCCAGGCGTAATTATTGCCGTGGAAAATCTCTCATTGCACCTGAATTGTCCTCACCAGCATCATCATCTTTGTTAGTGACTGAGCAGGGCCACTGGGCTAACTTGCCGCCTGAGTTGTTGTTAGACATAATTCAAAGGGTGGAAGCAAGTGAAACTTCCTGGCCTGCCCGGAGGGCCGTTGTAGCCTGTGCCTCAGTTTGTAGGTCATGGAGAAAAATAACAGAGGAGCTGGTGAAGACACCAGAACAGTGTGGGTGGCTTACCTTTCCCATATCGCTGAAGCAGCCTGGTCCAAGAGAGACTCCAATTCAGTGTTTTATAAAGAGAGAAAGGGCAACTTCAAAATATCATTTATATCTTGGTTTGAGCCCAGCTCTCTCTGGTGATATGAGCAAGCTGCTACTGGCAGCAAAGAAGATTAGACGGACAACATGTACAGAATTTTTTATATCCTTGGTCGCAGATGATTTTTCTAAAGCAAACAATACTTATGTTGGAAAGTTGAGGTCGAATTTTCTAGGCACCAAGTTCATGATCTTGGATAGTCAGATTCCGCTTGGCTCTTCCCTTCCATTGAATAATAATAAATTGCAGCAAAGAATCCATTCAAAGCAGGTTCTTCCAAGGGTTGCTGCTGCAAAGTGTAATGTGGCCACCATATCCTATGAGCTCAATGTTCTCCGCACAAGAGGTCCAAGGAGAATGCGGTGTACCATGCATTCAATTCCCATATCTTCCGTCCAAGAAGGGGGCACTGCTCCTACTCCTTTGAAGTTTACTAATTGCCTCGATGAACATTTATCTACCACGCTCATATCAAAGGGAAAAGAGCCAGGAGTTGAGCATGACACCATTAGTGATGACATGCCCCCAGAATTGTACGTCTCGGGAGAACCACTTATTTTGAAAAATAAAGCTCCTAGATGGCATGAACAACTGCAATGTTGGTGCTTGAATTTCAAGGGACGTGTTACAGTGGCCTCAGTGAAGAACTTCCAGCTCGTAGCAGCTGCAGAACCTCAACAAAATGTTTCAGCGGCAGAACAAGATAGAGTGATACTACAATTTGGGAAGATTGGAAAGGACATATTCACCATGGATTACCGTTATCCCCTCTCTGCATTTCAAGCCTTTGCAATATGCTTGAGCAGCTTTGACACCAAACCTGCTTGCGAGTGA 1257 0.4463 MPFRDFVRELREIRDGMGNISRRGIDARRNYCRGKSLIAPELSSPASSSLLVTEQGHWANLPPELLLDIIQRVEASETSWPARRAVVACASVCRSWRKITEELVKTPEQCGWLTFPISLKQPGPRETPIQCFIKRERATSKYHLYLGLSPALSGDMSKLLLAAKKIRRTTCTEFFISLVADDFSKANNTYVGKLRSNFLGTKFMILDSQIPLGSSLPLNNNKLQQRIHSKQVLPRVAAAKCNVATISYELNVLRTRGPRRMRCTMHSIPISSVQEGGTAPTPLKFTNCLDEHLSTTLISKGKEPGVEHDTISDDMPPELYVSGEPLILKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAEPQQNVSAAEQDRVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g2748 418 CDD F-box_AtTLP-like 58 102 - -
Prci10g2748 418 ProSitePatterns Tub family signature 2. 403 418 IPR018066 -
Prci10g2748 418 SUPERFAMILY Tubby C-terminal domain-like 107 418 IPR025659 -
Prci10g2748 418 Gene3D Tubby Protein; Chain A 116 418 IPR025659 -
Prci10g2748 418 PANTHER TUBBY-RELATED 48 416 - -
Prci10g2748 418 Pfam Tub family 119 413 IPR000007 -
Prci10g2748 418 ProSitePatterns Tub family signature 1. 346 359 IPR018066 -
Prci10g2748 418 SUPERFAMILY F-box domain 55 126 IPR036047 GO:0005515
Prci10g2748 418 PRINTS Tubby superfamily signature 240 267 IPR000007 -
Prci10g2748 418 PRINTS Tubby superfamily signature 375 394 IPR000007 -
Prci10g2748 418 PRINTS Tubby superfamily signature 174 190 IPR000007 -
Prci10g2748 418 PRINTS Tubby superfamily signature 190 214 IPR000007 -
Prci10g2748 418 PRINTS Tubby superfamily signature 328 345 IPR000007 -
Prci10g2748 418 PRINTS Tubby superfamily signature 396 418 IPR000007 -
Prci10g2748 418 PRINTS Tubby superfamily signature 346 362 IPR000007 -
Prci10g2748 418 Pfam F-box domain 58 103 IPR001810 GO:0005515
Prci10g2748 418 Gene3D - 53 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g2748 Prci-Chr10 35790616 35794523 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g2748 1 418 TUB Transcription Factor Family AT2G18280 57.177 1.74e-163 463
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Prci10g2748 Tub 1.8e-104 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g2748 K19600 - zju:107420271 613.609