Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Prci10g2722 | ATGGGGGATCACTTCGTCTTGCTTGTAGATAGGTTGATTACTGAGTCCACACTAGAAGCTGCTCTGGAAAGCCAAAAACGGTCAATGGAGGTGGCATCCTCTGCTGTGAAAGATACAGAGGTTGACGTCTCTGTAGTGAATATGGATATTGGAGACATGAGATCTCAGGGGAAATTGGTACAGTGCAGGATATGCCATGATGAGGATGAATTCTCCACAATGGAGACACCTTGTTTGTGTTCTGGTAGTTTGAAGTATGCCCATCGACAATGCATACAGCGGTGGTGTAATGAGAAAGGAGACATCACATGTGAGATATGCCTCCAGCAATTTAAACCCGGTTACACTGCTCCCCCTCCACTGTTTCGATTAGGGCGTCTTCGAATGAATTTCAGGAGAAATTGGGAAATATCAAGAAGAGACTTGCAATTGCATAATGCTACTCAAATTGTTCGTGTTGTCTCGCCTGACCAGAATCTTGCCGATTTTACCTGTGATCAGTGTTCAGCATCTGCTATCTTTTGTTCAATTTCAATCTTTATCTTGATTATACTGATACTGAAACATGCTCTCTCGCTACTTGAAATGATTGGAAGTGTGGAATATTCCTTGCCAATCTATATGTTATTGCTTGCACGGATTCTGGGTGTGACTTTGTCTATTTATGTCATGCGGAGAACTGTGAACTTTGTGCAGCAGCAGCGGCAACAACGACTAGTGGAACCTCGTACTGCATCTGGTAGTCAATACAGCAACCAGAATGACCAACAGGCTTTGCAACGTCAGCCACAAGTCGCTCCTGTATAG | 807 | 0.4387 | MGDHFVLLVDRLITESTLEAALESQKRSMEVASSAVKDTEVDVSVVNMDIGDMRSQGKLVQCRICHDEDEFSTMETPCLCSGSLKYAHRQCIQRWCNEKGDITCEICLQQFKPGYTAPPPLFRLGRLRMNFRRNWEISRRDLQLHNATQIVRVVSPDQNLADFTCDQCSASAIFCSISIFILIILILKHALSLLEMIGSVEYSLPIYMLLLARILGVTLSIYVMRRTVNFVQQQRQQRLVEPRTASGSQYSNQNDQQALQRQPQVAPV | 268 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Prci10g2722 | 268 | MobiDBLite | consensus disorder prediction | 241 | 268 | - | - | |
| Prci10g2722 | 268 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 50 | 117 | IPR013083 | - | |
| Prci10g2722 | 268 | FunFam | Zinc finger family protein | 50 | 117 | - | - | |
| Prci10g2722 | 268 | CDD | RING_CH-C4HC3_MARCH | 62 | 107 | - | - | |
| Prci10g2722 | 268 | Pfam | Protein of unknown function (DUF3675) | 113 | 227 | IPR022143 | - | |
| Prci10g2722 | 268 | PANTHER | RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING | 1 | 238 | IPR033275 | - | |
| Prci10g2722 | 268 | SMART | ringv_2 | 61 | 108 | IPR011016 | GO:0008270 | |
| Prci10g2722 | 268 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 54 | 114 | IPR011016 | GO:0008270 | |
| Prci10g2722 | 268 | SUPERFAMILY | RING/U-box | 60 | 112 | - | - | |
| Prci10g2722 | 268 | Pfam | RING-variant domain | 62 | 107 | IPR011016 | GO:0008270 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Prci10g2722 | Prci-Chr10 | 35546003 | 35551008 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Prci10g2722 | 62 | 107 | C3H Transcription Factor Family | AT2G37950 | 46.939 | 2.12e-07 | 48.5 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Prci10g2722 | - | - | pcin:129297393 | 414.075 |