Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g2679 ATGGGTTTGCAAAACCAGCTAAACGACGTCGCTTCAGATTCGATTCCTCTGCTTTTCTTGGCCTTCGTCGCCGACTGCTTCAATCAGCTCCGTTCCTTCCTCATCGCTCTCCTCCAATCGCTAGGACTCTCCAGATTCGACCCGAACCCGGCCGTAGTCGACGATGGATTTTTCACAGCCGTCGGATCGGGCCTTGCCAGCTTGATCGTCCTCTCCGAGCAGCTCAATCTTAATCAACGCGTCTCCTACCGATACTCCGTTGTAGGTGGCGGCGATGAGGGTCCTGCCGGCGTGATTGGTTCTCCCAAGTGTGTGGTGTGCCAGAGCACCTTCGAAGACGGAGACCAGGTTCGACGCCTTCCGTGCTGCCATGTGTTTCACCGATGCTGCTTCGATGGTTGGCTGGACCACCTCAATTTCAACTGCCCCCTCTGTCGGACGCCGGTTGTCTCCGACGAGCGCGTGGCCCTTGCTGAGCAGCGCGTCGGTCCCGAGCTTGTTGCCTGGTTCTCTTCGCGGTGA 522 0.5805 MGLQNQLNDVASDSIPLLFLAFVADCFNQLRSFLIALLQSLGLSRFDPNPAVVDDGFFTAVGSGLASLIVLSEQLNLNQRVSYRYSVVGGGDEGPAGVIGSPKCVVCQSTFEDGDQVRRLPCCHVFHRCCFDGWLDHLNFNCPLCRTPVVSDERVALAEQRVGPELVAWFSSR 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g2679 173 SMART ring_2 104 145 IPR001841 -
Prci10g2679 173 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 95 155 IPR013083 -
Prci10g2679 173 Pfam Ring finger domain 103 146 IPR001841 -
Prci10g2679 173 ProSiteProfiles Zinc finger RING-type profile. 104 146 IPR001841 -
Prci10g2679 173 PANTHER RING ZINC FINGER PROTEIN-RELATED 72 157 - -
Prci10g2679 173 SUPERFAMILY RING/U-box 103 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g2679 Prci-Chr10 35212105 35213020 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g2679 1 171 C3H Transcription Factor Family AT1G15100 45.614 9.16e-43 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g2679 K16282 - qsa:O6P43_032678 235.343