Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g2663 ATGCATAATAAGGACGCTTGCTCTTCTTCTTCGAATGGCGGAGTCGGTACCAACATTACTGCTTCTGGTCAAGTGCAGTCGAGTGGCGCCATTTATGGTGCCATCTACTCCACTCTGTTTTCTGACAAGCCGTCCTACTCAGCAACGGACAATGGCGACCTCTCGGCTTACCCGTATGAAGGAAACTCTCCCATGAAGTATAATGACTCACCGATTCAGAGTCACCTGTACGACTCCTGCGTCATACAGAATCATCAAGATATGGTGAACCGCCATAGCATGTGCCTAAATCGCCTTGCCGAAACCTCAAAGGAGGTCGAGGCTCTGCGGCAGGAGAACAGCCAACTTCGGGCTGTGAACATGGAGCTGAACAGCCAATTGAGCCTCCTCATTCAGGTTTCGGTCCAGAATCAATTGGATGGCTCCTCTGGTCTTACAGAAGCCTTTGACGTCATAAATGGGTTTCGTGGCTTACGTGTTGCGGACAATTTCGGGGATGGGAAGGAGAACTGTGAAAATTGGACAAAGGATCAAGAGGTTTCGAACGAGAGCCCAACAAGCGTGATTGAGAACAATGGCGAAGTGGAAAGGTTCTCGCTGCCCAAGAGCATATCCGTGAGATCAAATGGGTACTTGAAGGTTGCTCAGGCTTCGACCGGCTCCAGCAATGGAAGTCGCACCAAGGGCGCTGCTCGGCCACGCCCATCTTTGACCCCAACCGATGTCGTTCAAAAGGTGTATGTACGTGGAGGGAAGAAAGAGGAAGAGCCTCTGGAGATGGTGGTGTATAACCAAGGTATGTTCAAGACGGAGCTGTGCAACAAATGGCAGGAGACGGGAACATGCCCCTATAAGGATCAGTGCCAATTCGCTCACGGTATTGGTGAGCTCCGCCCAGTCATCCGCCATCCACGCTACAAAACGGAGGTCTGCAGGATGGTCCTTGCTGGCGTTGTATGCCCATACGGCCATAGATGCCATTTCCGCCATGCACTCACTGAACAAGAGAAAGCCATAGCACACGCACAGCCTAATAAGCCCCGGCCGATGAACCTGCACAGATGA 1065 0.5174 MHNKDACSSSSNGGVGTNITASGQVQSSGAIYGAIYSTLFSDKPSYSATDNGDLSAYPYEGNSPMKYNDSPIQSHLYDSCVIQNHQDMVNRHSMCLNRLAETSKEVEALRQENSQLRAVNMELNSQLSLLIQVSVQNQLDGSSGLTEAFDVINGFRGLRVADNFGDGKENCENWTKDQEVSNESPTSVIENNGEVERFSLPKSISVRSNGYLKVAQASTGSSNGSRTKGAARPRPSLTPTDVVQKVYVRGGKKEEEPLEMVVYNQGMFKTELCNKWQETGTCPYKDQCQFAHGIGELRPVIRHPRYKTEVCRMVLAGVVCPYGHRCHFRHALTEQEKAIAHAQPNKPRPMNLHR 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g2663 354 FunFam zinc finger CCCH domain-containing protein 15-like 261 300 - -
Prci10g2663 354 SUPERFAMILY CCCH zinc finger 264 299 IPR036855 GO:0046872
Prci10g2663 354 ProSiteProfiles Zinc finger C3H1-type profile. 267 295 IPR000571 GO:0046872
Prci10g2663 354 PANTHER CCCH ZINC FINGER/TIS11-RELATED 85 339 IPR045877 GO:0003729
Prci10g2663 354 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 268 293 IPR000571 GO:0046872
Prci10g2663 354 Coils Coil 99 126 - -
Prci10g2663 354 SMART c3hfinal6 267 294 IPR000571 GO:0046872
Prci10g2663 354 SMART c3hfinal6 305 332 IPR000571 GO:0046872
Prci10g2663 354 MobiDBLite consensus disorder prediction 216 238 - -
Prci10g2663 354 FunFam Zinc finger protein 36, C3H1 type-like 1 301 337 - -
Prci10g2663 354 SUPERFAMILY CCCH zinc finger 301 335 IPR036855 GO:0046872
Prci10g2663 354 Gene3D - 262 300 - -
Prci10g2663 354 Gene3D - 301 337 - -
Prci10g2663 354 ProSiteProfiles Zinc finger C3H1-type profile. 305 333 IPR000571 GO:0046872
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g2663 76 340 C3H Transcription Factor Family AT1G68200 54.074 1.46e-86 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Prci10g2663 zf-CCCH 4.8e-10 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g2663 K18753 - gmx:100819250 426.017