Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g2642 ATGGCGATGCCAGACGGAGCTCTGGCTATAATAAATGGCACTGTGAACGCAGTTGATTCTTCACCTTCCAAGACTTGCCTAAAGAACTCGCCCCTCAAATCGCCGATTCTGATATTCTCTTTCTTTCATAAAGCTATTCGCTCTGAGCTCGATAGCCTCCATCGAGCCGCCTTGGATTTTGCCACTAACCAGCAAGCTGCAGCATCTGATATCAAACCCTTGTTCGACCGCTGTCACTTTCTTCGTACCGTCTATAAGCATCATTGTAATGCGGAGGATGAGGTCATATTTCCTGCATTAGATATACGTGTGAAGAATGTTGCGCGCACATATTTCTTGGAGCATGAGGGAGAGGGTCTTCTATTTGATCAATTGTTCAAGCTGCTAAATTCTAATTTGCTAGAGTATGAGGGCTACCGTAGAGAATTAGCTTCTTGTACTGGTGCCCTTCGAACATCAATTAGCCAGCATATGTTTAAGGAAGAGGAGCAGGTCTTCCCCTTGGTTATTGAGAACTTTTCATTTAAAGAGCAGGCATCACTGGTGTGGCAATTTCTTTGCAGCTTGCCAGTTAAAATGATGGCAGAATTTCTTCCCTGGCTTGCCTTGTATGTATCATCTGATGAACATCAGGATATGCTTAAGTGCTTGTGCTCAATAATCCCTGAAGAGAAGCTTCTTCAACAGGTTGTTTTTGGATGGGTGGAAGGGGTAAAGATTAAATGTAGAAGCTGCACAAATGATGCCAAGGCTCGTTGTGATAATGTTGGGACGTATGACTTAATCAGTTGTTCTGAAAAGGTGTATTGTGGTTGTGAACCTTCCGAAAGTGGAAAAAGGAAATGGACGGAGCTAAGCATTGACGATACCAGTTCTTCTTCATCATGCCCTATAGATGAAATATTACTTTGGCATAAGGCTATAAAACAAGAGATGATTGATTTAACTGAGGCTGTTAGGAAGATACAACGTTCTGGAAAATTTTCTGATTTGTCTGCATTTAATGGGAGGTTGCAGTTTATTACTGAAGTCTGCATCTTTCATAGCATTGCTGAGGACAAAGTTATATTCCCTGCTATAGATGCAGAGGTTTCTTTTCTCGATGAGCATGCCGATGAGGAACTTCAGTTTGACAAGCTTAGATCCCTGATGGAAGGAATTCAGAATGCTGAAGTCAACTCATCATCTACTGAAGATTACATGAAGTTGAGGTCTCACACTGAACAAATAAAGGACACCATACTGAAGCACTTTGACAATGAGGAAGCTCAGGTTCTACCACTTGCACGAAAACATTTTACCCCCCAAAGACAACGAGAATTACTTTATGAAAGTTTGCGCTTAATGCCTTTGAAATTGATTGAATCTGTAATCCCGTGGCTCGTTGGATTTCTTAGTGAAGATGAAGCAAAGTTATTTCTACTGAATATGTATATGGCAGCCCCTACAACAGATTATGCATTAATAACACTGTTTTCTGGTTGGGCATGCAAAAGAAAATCCAGAAACAATAGTTCCTTCTCAAGTAAAACAGGTTTGTGTTCTGCCAGGAAACTATCGGAGATAGAGAATACTAGCCCATCATTCTGCATATGTGCACCTTCGTTCAGTCCCGAGACAAAATACTCATCCATTCAACAAGACAATGTATATGGAAGTCGGACCAGTCAAATGTGGAAAGCCAAAACTGGGGATGGGAATGGTGTTTCTTCCTGCACTGGACTTAGAGAATCTTTTAACTTACCTGATAATCAGACTTGCTGTGTCCCTGGATTAGGGGTAAATGCAAGTCATCTGGGAGCATCTTCATTAGTCTCTACAAAATCTCTGCGATCCTTATCTGATTGCTCTGTGCCTTCACTTAACTCTAGTCTGTTTGTCTGGGAAACAGATGTTGGTTCTTCTGACAATGGGTTCAAAACACGCCCTATTGATAACATATTTAAATTTCATAAAGCCATATGTAAAGACTTGGAGTATATAGATGTTGAATCTGGAAAACTGTTTGATTGTGATGAAAATTTCCTGAGGAAGTTCACTGGTAGATTTCGCTTATTGTGGGGTTTGTACAGAGCTCATAGCAATGCAGAGGATGATATAGTATTTCCGGCATTAGAATCAAAAGAAAATCTTCACAATGTGAGTCATTCCTACACTTTGGACCATCAGCAGGAAGAGAAATTATTTGTTGATATTTCATCTGGACTGTCAGAGCTTAGTCACTTACATGAATCCTTGAATAATAAGAATTCATCTGATCATTTTACCAGCTTCTGCGCTGATTATTCTGATTGCTCTGATGCCATACAGAAGTACAATGAGTTAGTTACAAAGATTCAGGGCATGTGCAAATCCATTAGAGTAACGCTAGATCAACATATCTTCCGTGAGGAACTTGAACTATGGCCGCTATTTGACGTGCATTTCTCTGTAGAAGAACAGGATAAAATTGTTGGTTGTATAATTGGTACTACTGGGGCAGAGGTTCTTCAATCAATGCTGCCATGGGTAACTTCTGCTCTCACACAAGAGGAGCAAAACAAAATGATGGACACATGGAAGCAGGCTACAAAAAACACCATGTTCAATGAGTGGCTTAATGAATGGTGGGAAGGACCTGCTTCATTTTCAAACACAACTACACCCAGTGACCATGTTTCACTAGGTGCTGACGCCTTTGGAAATTTGGATCATAGCTTTCAAGCTTTCAGGCCCGGGTGGAAAGATATATTCAGGATGAACCAGAATGAACTAGAATCAGAAATTAGAAAAGTTTCTCAAGATTCAACTCTTGATCCAAGAAGGAAATCCTATCTTATTCAAAATCTATTGACTAGTCGCTGGATAGCTTCTCAGCAGAAGTCATCTAAAGCAACAGCAGATGAATTTGGAAATGGAGAAGATGTACTTGAAAGATTACCTTCCTATCATGATCCAGAGAAAAAAATCTTTGGTTGTGAGCATTACAGAAGAAATTGTAAACTTCTTGCTGCTTGCTGTGGAAAGCTATTCTCCTGCAGGTTCTGCCATGACAAAGTCAGTGACCATTCCATGGATAGGAAGGCTACAGCTGAGATGATGTGCATGCGCTGCCTGCAATTACAGCCAATTGGACCAGTTTGTGCAACATCTTCTTGTGGTGGTCTGTCAATGGCAAAGTACTACTGTAGTATTTGCAAGTTTTTTGATGACGAAAGGACAGTTTACCATTGCCCTTTCTGCAATATATGCCGTCTGGGGAAAGGACTTGGTGTTGATTCTTTCCATTGCATGCAGTGTAATTGTTGCTTGTCAATGAAATTAGTTGATCACAAGTGCCAGGAAAAAAGCTTAGAAACAAACTGCCCTATCTGCTGTGATTTTTTGTTCACATCTAGTACATCTGTCAGAGCTCTTCCTTGTGGACATTTCATGCATTCCACTTGCTTTCAGGCATATACTTGTAGTCACTACACCTGTCCAATTTGTCGTAAATCTTTGGGAGATATGGCGGTTTATTTTGGCATGCTTGATGCTCTGTTGGCTTCTGAGGAACTCCCTGAGGAATATCGGAATCGTCATCAGGATATACTATGTAATGATTGCGATAAGAAGGGGAGTGCACCATTCCATTGGCTGTACCATAAGTGTGGGTTATGCGGGTCTTACAATACAAGGGTGATTTAA 3666 0.4075 MAMPDGALAIINGTVNAVDSSPSKTCLKNSPLKSPILIFSFFHKAIRSELDSLHRAALDFATNQQAAASDIKPLFDRCHFLRTVYKHHCNAEDEVIFPALDIRVKNVARTYFLEHEGEGLLFDQLFKLLNSNLLEYEGYRRELASCTGALRTSISQHMFKEEEQVFPLVIENFSFKEQASLVWQFLCSLPVKMMAEFLPWLALYVSSDEHQDMLKCLCSIIPEEKLLQQVVFGWVEGVKIKCRSCTNDAKARCDNVGTYDLISCSEKVYCGCEPSESGKRKWTELSIDDTSSSSSCPIDEILLWHKAIKQEMIDLTEAVRKIQRSGKFSDLSAFNGRLQFITEVCIFHSIAEDKVIFPAIDAEVSFLDEHADEELQFDKLRSLMEGIQNAEVNSSSTEDYMKLRSHTEQIKDTILKHFDNEEAQVLPLARKHFTPQRQRELLYESLRLMPLKLIESVIPWLVGFLSEDEAKLFLLNMYMAAPTTDYALITLFSGWACKRKSRNNSSFSSKTGLCSARKLSEIENTSPSFCICAPSFSPETKYSSIQQDNVYGSRTSQMWKAKTGDGNGVSSCTGLRESFNLPDNQTCCVPGLGVNASHLGASSLVSTKSLRSLSDCSVPSLNSSLFVWETDVGSSDNGFKTRPIDNIFKFHKAICKDLEYIDVESGKLFDCDENFLRKFTGRFRLLWGLYRAHSNAEDDIVFPALESKENLHNVSHSYTLDHQQEEKLFVDISSGLSELSHLHESLNNKNSSDHFTSFCADYSDCSDAIQKYNELVTKIQGMCKSIRVTLDQHIFREELELWPLFDVHFSVEEQDKIVGCIIGTTGAEVLQSMLPWVTSALTQEEQNKMMDTWKQATKNTMFNEWLNEWWEGPASFSNTTTPSDHVSLGADAFGNLDHSFQAFRPGWKDIFRMNQNELESEIRKVSQDSTLDPRRKSYLIQNLLTSRWIASQQKSSKATADEFGNGEDVLERLPSYHDPEKKIFGCEHYRRNCKLLAACCGKLFSCRFCHDKVSDHSMDRKATAEMMCMRCLQLQPIGPVCATSSCGGLSMAKYYCSICKFFDDERTVYHCPFCNICRLGKGLGVDSFHCMQCNCCLSMKLVDHKCQEKSLETNCPICCDFLFTSSTSVRALPCGHFMHSTCFQAYTCSHYTCPICRKSLGDMAVYFGMLDALLASEELPEEYRNRHQDILCNDCDKKGSAPFHWLYHKCGLCGSYNTRVI 1221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g2642 1221 CDD Hr-like 647 803 - -
Prci10g2642 1221 SUPERFAMILY CHY zinc finger-like 977 1042 IPR037274 GO:0008270
Prci10g2642 1221 Gene3D nmb1532 protein domain like 639 868 - -
Prci10g2642 1221 Pfam Zinc-ribbon 1162 1219 IPR039512 -
Prci10g2642 1221 CDD Hr-like 299 427 - -
Prci10g2642 1221 Gene3D - 1185 1221 - -
Prci10g2642 1221 FunFam Zinc finger protein-related isoform 1 1110 1159 - -
Prci10g2642 1221 ProSiteProfiles Zinc finger CTCHY-type profile. 1051 1114 IPR017921 -
Prci10g2642 1221 FunFam Zinc finger protein BRUTUS 638 868 - -
Prci10g2642 1221 SUPERFAMILY RING/U-box 1114 1161 - -
Prci10g2642 1221 Pfam Ring finger domain 1114 1157 IPR001841 -
Prci10g2642 1221 CDD Hr-like 38 167 - -
Prci10g2642 1221 CDD RING-H2_Pirh2-like 1114 1157 - -
Prci10g2642 1221 ProSiteProfiles Zinc finger RING-type profile. 1115 1157 IPR001841 -
Prci10g2642 1221 Pfam Hemerythrin HHE cation binding domain 297 429 IPR012312 -
Prci10g2642 1221 Pfam Hemerythrin HHE cation binding domain 43 169 IPR012312 -
Prci10g2642 1221 Pfam Hemerythrin HHE cation binding domain 643 804 IPR012312 -
Prci10g2642 1221 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1108 1159 IPR013083 -
Prci10g2642 1221 Gene3D nmb1532 protein domain like 299 444 - -
Prci10g2642 1221 Gene3D nmb1532 protein domain like 31 187 - -
Prci10g2642 1221 ProSiteProfiles Zinc finger CHY-type profile. 979 1048 IPR008913 GO:0008270
Prci10g2642 1221 SMART ring_2 1115 1156 IPR001841 -
Prci10g2642 1221 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 686 1221 - -
Prci10g2642 1221 Pfam CHY zinc finger 986 1061 IPR008913 GO:0008270
Prci10g2642 1221 SUPERFAMILY Zinc hairpin stack 1052 1107 IPR037275 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g2642 Prci-Chr10 34803854 34812217 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g2642 34 1221 C2H2 Transcription Factor Family AT3G18290 61.988 0.0 1483
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g2642 K16276 - cave:132161657 1776.53