Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g2611 ATGAACAATCTCTGCAAAAAGATGAAGCCGAAGCAAAATCCCATTCCGTCGAGAAAGCTTCGCATAATCTGTGACGACCCTTATGCCACAGATTCGTCTTCAAGCGAAGACGAAGGAGAGCGAAGAATCGAAAGACCGCCGAGAAAGATGAAGCGAATCGTTCGTGAGCTCACTCTCCCTCTTTCTTCTGCCATGTCTAAATCCACTGAAACTGAAAGCTCGTTTCAGGAAAGCAATAACGGAGTCCTCAAGACATCCTCGAAGTTCGCAGATGGTCAAGCCCATAACAAGAAGAGGGTTTTGACCAAAACCCCATCAACGAGAAGCTCGTCTTCTTCGAGATTCAGAGGCGTTCGACAGAGAAAATGGGGGAAATGGGCTGCTGAAATTCGCGATCCATTTAAAGGTGTTCGTATCTGGCTTGGTACTTACAACACCGCACAGGAAGCTTCTCAAGCCTATGAAACGAAGAAGATGGAGTTCGAAGCCATGGCTAAGGCTAAGGCTGAGGCTCAGGCTCAATCTGACAAGAGTCATATTGTTTCTTCTTCCTCAGCTCAAGTTGCTGCTTCTGTATCAGAAGATTCTGAGAGCGTCTTCTCTCAAACTTCACCTTCCTCTGTGCTTGAACTCGATACCTCAACCTCCAAATCCACTGAAGATGCTAACATCATCAACAGCAGTTCAAGCAGAGAAGAAAACGAAGAACATCAAGCAGCAGCAGCAGCAGCAGCAGCACCTGCTATAGCTATTGAGACTAACGATTTTGAGAATGAATTTGCAGAACTCCAAATCCCAGATTTGAGCTTCCTGAGCGAGCCGCCAGTACAAGCACCACCTGCATCATCATCTGCAATACCAGATGTTTCAGGCATAAACCTCGGATTCGATGTGGACTGGGTAATGGTCGACGATTTTGGTCAGGGTTTGAATGATCCTTTTGGGTTGGACGACATGCAGATTTGTGGGTTTGATGACGATGACAACAATGCCAGTGAGCTGCCTGATTTCGATTTTGATCTGTTTGTTGATGAGTTTGCTGGCTGGACTGAGGAGCCCCTCAATATTACCTTGCGTATAAATTTTGCGGCTAGCTTCAACAAAACAACAGCAGCATAG 1119 0.462 MNNLCKKMKPKQNPIPSRKLRIICDDPYATDSSSSEDEGERRIERPPRKMKRIVRELTLPLSSAMSKSTETESSFQESNNGVLKTSSKFADGQAHNKKRVLTKTPSTRSSSSSRFRGVRQRKWGKWAAEIRDPFKGVRIWLGTYNTAQEASQAYETKKMEFEAMAKAKAEAQAQSDKSHIVSSSSAQVAASVSEDSESVFSQTSPSSVLELDTSTSKSTEDANIINSSSSREENEEHQAAAAAAAAPAIAIETNDFENEFAELQIPDLSFLSEPPVQAPPASSSAIPDVSGINLGFDVDWVMVDDFGQGLNDPFGLDDMQICGFDDDDNNASELPDFDFDLFVDEFAGWTEEPLNITLRINFAASFNKTTAA 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g2611 372 SMART rav1_2 114 178 IPR001471 GO:0003700|GO:0006355
Prci10g2611 372 MobiDBLite consensus disorder prediction 194 245 - -
Prci10g2611 372 MobiDBLite consensus disorder prediction 1 116 - -
Prci10g2611 372 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 18 249 - -
Prci10g2611 372 MobiDBLite consensus disorder prediction 34 55 - -
Prci10g2611 372 PRINTS Ethylene responsive element binding protein signature 137 153 IPR001471 GO:0003700|GO:0006355
Prci10g2611 372 PRINTS Ethylene responsive element binding protein signature 115 126 IPR001471 GO:0003700|GO:0006355
Prci10g2611 372 MobiDBLite consensus disorder prediction 99 116 - -
Prci10g2611 372 ProSiteProfiles AP2/ERF domain profile. 114 172 IPR001471 GO:0003700|GO:0006355
Prci10g2611 372 SUPERFAMILY DNA-binding domain 113 161 IPR016177 GO:0003677
Prci10g2611 372 MobiDBLite consensus disorder prediction 194 229 - -
Prci10g2611 372 Gene3D AP2/ERF domain 113 170 IPR036955 GO:0003700|GO:0006355
Prci10g2611 372 MobiDBLite consensus disorder prediction 61 90 - -
Prci10g2611 372 Pfam AP2 domain 113 162 IPR001471 GO:0003700|GO:0006355
Prci10g2611 372 CDD AP2 117 154 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g2611 Prci-Chr10 34215910 34217978 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g2611 16 365 AP2-EREBP Transcription Factor Family AT1G68550 35.376 4.23e-42 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Prci10g2611 AP2 2e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g2611 - - pcin:129321238 630.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci10g2611 10 34215910 34217978 Prci10g2611 10 34215910 34217978 ECH