Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g2608 ATGAAGATTTTCGTCAAGACTCTTAAAGGCACTCACTTCGAAATTGAAGTGAAGCCCGATGACACGGTTACTGAAGTGAAGAAAAATATAGAAACTGTTCAGGGTGCAGATGTCTATCCCGCTGCACAGCAGATGCTTATCCATCAAGGGAAGGTTCTCAAAGATAGCACCACCTTGGAGGAAAATAAAGTAGTTGAAAACAGTTTTGTTGTAATTATGCTTTCTAAGAGCAAGAGCTCATCTAGTGAGGGTTCTACTACTTCAGCTGCACCTTCAACAAAGACCCCAGCAACAAGTGCTGTACCCTCTTCCACTCCTGTTTCAACCACACCTCAAGCTCCTGCTGCAGCGCCTGCTCCTTCTCCTTCTCCTTCTCCTTCTCCTTCTCCTTCTCCTGCACCAGCACCAGCACCAGCACCTACTCCTGCTCCTGTCACTTCAGGCACTGCTGTGCCAGATTCTGATATCTATGGACAGGCAGCATCTAACCTTGTAGCTGGAATCAACTTGGATGAAACCATTCAGCAAATTCTTGATATGGGTGGAGGGAGCTGGGATAGGGATACTGTAGTTCGTGCTCTACGTGCTGCTTACAATAATCCTGAGAGAGCCGTTGAGTATTTGTACACAGGTATTCCAGAGCAAGCTGATGCTCCTCCTGTGGCCCGGGTGCCTTCAAGTCCACAAACTGCAAATCCTCCAGCACCAGCTTCACAAGCTGCACAGCCAGCACCTGCTTCTACAAATGGACCTAACGCTAATCCCCTAGACCTTTTTCCTCAGGGCCTCCCCAACGTTGGTTCCGGTGCTGCTGGTGCTGGCACTCTTGATTTTCTGCGCAATAGTCAGCAGTTCCAAGCCTTGCGAGCTATGGTGCAGGCAAATCCACAAATACTCCAGCCTATGCTTCAAGAGCTTGGGAAGCAAAATCCTCATCTTATGAGATTGATTCAAGAGCACCAGGCTGACTTCCTTCGCCTGATAAATGAACCTGTAGAAGGTGGTGAGGGGAACATATTAGGGCAGCTGGCTGCTGCCATGCCACAACAAATAGCTGTCACTCCTGAGGAGCGACAAGCAATTGAAAGACTTGAAGCAATGGGTTTTGATCGTGCACTCGTGTTGGAAGTATATTTTGCTTGCAACAAAAATGAGGAACTGGCTGCCAACTATCTTCTAGATCACATGCATGAGTTTGAGGAATGA 1206 0.4784 MKIFVKTLKGTHFEIEVKPDDTVTEVKKNIETVQGADVYPAAQQMLIHQGKVLKDSTTLEENKVVENSFVVIMLSKSKSSSSEGSTTSAAPSTKTPATSAVPSSTPVSTTPQAPAAAPAPSPSPSPSPSPSPAPAPAPAPTPAPVTSGTAVPDSDIYGQAASNLVAGINLDETIQQILDMGGGSWDRDTVVRALRAAYNNPERAVEYLYTGIPEQADAPPVARVPSSPQTANPPAPASQAAQPAPASTNGPNANPLDLFPQGLPNVGSGAAGAGTLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIQEHQADFLRLINEPVEGGEGNILGQLAAAMPQQIAVTPEERQAIERLEAMGFDRALVLEVYFACNKNEELAANYLLDHMHEFEE 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g2608 401 SMART uba_6 357 394 IPR015940 -
Prci10g2608 401 SMART uba_6 170 210 IPR015940 -
Prci10g2608 401 Pfam UBA/TS-N domain 171 208 IPR015940 -
Prci10g2608 401 Pfam UBA/TS-N domain 357 392 IPR015940 -
Prci10g2608 401 MobiDBLite consensus disorder prediction 218 259 - -
Prci10g2608 401 PRINTS DNA repair protein Rad23 signature 351 367 IPR004806 GO:0006289
Prci10g2608 401 PRINTS DNA repair protein Rad23 signature 302 324 IPR004806 GO:0006289
Prci10g2608 401 PRINTS DNA repair protein Rad23 signature 368 382 IPR004806 GO:0006289
Prci10g2608 401 PRINTS DNA repair protein Rad23 signature 383 398 IPR004806 GO:0006289
Prci10g2608 401 FunFam UV excision repair protein RAD23 homolog 163 213 - -
Prci10g2608 401 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 354 395 IPR015940 -
Prci10g2608 401 SUPERFAMILY UBA-like 169 216 IPR009060 GO:0005515
Prci10g2608 401 Gene3D - 267 332 IPR036353 GO:0003684|GO:0006289|GO:0043161
Prci10g2608 401 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 169 211 IPR015940 -
Prci10g2608 401 MobiDBLite consensus disorder prediction 233 255 - -
Prci10g2608 401 CDD Ubl_Rad23 1 74 - -
Prci10g2608 401 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 390 - -
Prci10g2608 401 SMART CBM 274 317 IPR006636 -
Prci10g2608 401 Pfam XPC-binding domain 276 331 IPR015360 GO:0003684|GO:0006289|GO:0043161
Prci10g2608 401 CDD UBA1_Rad23_plant 164 213 - -
Prci10g2608 401 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Prci10g2608 401 MobiDBLite consensus disorder prediction 76 112 - -
Prci10g2608 401 MobiDBLite consensus disorder prediction 113 145 - -
Prci10g2608 401 NCBIfam UV excision repair protein Rad23 1 400 IPR004806 GO:0006289
Prci10g2608 401 FunFam UV excision repair protein RAD23 B 267 332 - -
Prci10g2608 401 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Prci10g2608 401 SUPERFAMILY XPC-binding domain 272 338 IPR036353 GO:0003684|GO:0006289|GO:0043161
Prci10g2608 401 Gene3D - 1 80 - -
Prci10g2608 401 Gene3D - 163 213 - -
Prci10g2608 401 FunFam UV excision repair protein RAD23 homolog 348 396 - -
Prci10g2608 401 SUPERFAMILY Ubiquitin-like 1 88 IPR029071 -
Prci10g2608 401 SMART ubq_7 1 75 IPR000626 GO:0005515
Prci10g2608 401 FunFam UV excision repair protein RAD23 1 80 - -
Prci10g2608 401 SUPERFAMILY UBA-like 338 399 IPR009060 GO:0005515
Prci10g2608 401 Gene3D - 348 396 - -
Prci10g2608 401 MobiDBLite consensus disorder prediction 76 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g2608 Prci-Chr10 34147419 34161326 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g2608 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 39.189 3.79e-08 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g2608 K10839 - gmx:100809066 565.074
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci10g2608 10 34147419 34161326 Prci10g2608 10 34147419 34161326 ECH