Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g2566 ATGCAGCGTCAGAAAATGGGGTTTCGAGAATACATCGAAGCATTAGTAGAAGAACGCCGGAAAATTCAGATGTTCTCTAGGGAGCTTCCGCTTTCACTCGAGCTTGTCTCGCAAGCCATTGAAGCTTACAGGCAACAACTATCTGGAACCATGGAGTATAATTTTCAGGGACAATCGGATTGTTCGGAGCAGACGTCAATGGAAGAAGGTCCTGTTCTTGAAGAATTCATTCCCATTAAGAAAAGGTCTTCCCCTGATTGTGACGAGGAGGAGGATGAAGATGAACAACACTCGCATAAGCCGAAGATCTTCAAGGATAACAATAAGAACTCTGATAAGAGAAAATCCGACTGGCTCAGATCCGTCCAGCTCTGGAACCCAGATCCCCCAACCAAAGAGGATTTGCCCAGAAAAGCTACGGTGCTGGAAGTGAAGAGAAATGGAGGTGCGTTCCAGCCATTTCAGAGGGAAGACATTCCTGGAAAGAGTAACAATAACAACACATCGGCTGGTAAATCCGGGTCTCCGCCTCCGGTGGTGGCCGCAATGAGCTCCACCGCCGGCGGGGGCAGCAGCAAGAGATCGGAGGAGAAAGATGGGCAGGGTCAGAGGAAGCAACGGCGGTGCTGGTCACCTGAACTACATAAACGCTTCTTACAAGCCCTTCAACAGCTAGGCGGCCCAGATTCTGCAACTCCGAAGCAGATCAGAGAGCTCATGAAGGTCGATGGCCTCACAAATGATGAAGTCAAAAGCCACCTGCAGAAATTCCGGTTGCATACAAGAAGACCAAGTCCGATGATTCACAACAATGCTAATCCACAAACAGCTCCTTTTGTTCTTGTTGGGAACATTTTTATGCAACCTCCAGAATATGCTGCAACATCAGGTGAGGTGAACACGGCTGGAATTTATGCTCCGGTGGCGGCTCCTCCCCCGCAAGTGGCGGTTCCTCCCATGCCGGGGGCAGGTCCGGCGTTTGTTAAGAAGGCGAAGGTCAAGCAATTGGAGCAGGGTGAACAGTCACATTCAGATGAAGAGAGGGTGAATCACAGTGAAGGAGCTGTTCATTCTAATTCTTCTCCTGATTCGTCATCTTCCACACACACCACCACCTCTACTTCTCGTGGATATTAG 1137 0.4952 MQRQKMGFREYIEALVEERRKIQMFSRELPLSLELVSQAIEAYRQQLSGTMEYNFQGQSDCSEQTSMEEGPVLEEFIPIKKRSSPDCDEEEDEDEQHSHKPKIFKDNNKNSDKRKSDWLRSVQLWNPDPPTKEDLPRKATVLEVKRNGGAFQPFQREDIPGKSNNNNTSAGKSGSPPPVVAAMSSTAGGGSSKRSEEKDGQGQRKQRRCWSPELHKRFLQALQQLGGPDSATPKQIRELMKVDGLTNDEVKSHLQKFRLHTRRPSPMIHNNANPQTAPFVLVGNIFMQPPEYAATSGEVNTAGIYAPVAAPPPQVAVPPMPGAGPAFVKKAKVKQLEQGEQSHSDEERVNHSEGAVHSNSSPDSSSSTHTTTSTSRGY 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g2566 378 MobiDBLite consensus disorder prediction 333 353 - -
Prci10g2566 378 NCBIfam myb-like DNA-binding domain, SHAQKYF class 205 260 IPR006447 GO:0003677
Prci10g2566 378 MobiDBLite consensus disorder prediction 158 174 - -
Prci10g2566 378 MobiDBLite consensus disorder prediction 94 115 - -
Prci10g2566 378 MobiDBLite consensus disorder prediction 59 115 - -
Prci10g2566 378 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 7 350 IPR044787 GO:0003700|GO:0006355
Prci10g2566 378 MobiDBLite consensus disorder prediction 147 211 - -
Prci10g2566 378 FunFam Myb family transcription factor 204 262 - -
Prci10g2566 378 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 202 262 IPR017930 -
Prci10g2566 378 MobiDBLite consensus disorder prediction 192 211 - -
Prci10g2566 378 MobiDBLite consensus disorder prediction 331 378 - -
Prci10g2566 378 MobiDBLite consensus disorder prediction 354 378 - -
Prci10g2566 378 SUPERFAMILY Homeodomain-like 203 263 IPR009057 -
Prci10g2566 378 Pfam Myb-like DNA-binding domain 207 256 IPR001005 -
Prci10g2566 378 Gene3D - 204 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g2566 Prci-Chr10 33561404 33563930 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g2566 10 310 G2-like Transcription Factor Family AT1G68670 50.313 1.70e-82 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Prci10g2566 Myb_DNA-binding 1.9e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g2566 - - qsa:O6P43_032783 407.142