Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g2565 ATGCAGACTCATGATCAGTACTCTAATTTCTCCTACATCGCGTCATGTCTGGAAGCAGACCAAGTACTTGACGACGAACACTCCATTTCCCTCTCCCTCGGACCTCCTGGCCAACACACCGTTTCTAATTCTTCCAAGGTCATGAACCCCTCTATTACATCTTCTTCCAACGACGTCGTTTCTCTGCATCATCATCATCATCCCCAAAACCCTATCTCTGATCATCTCGGCGTTACGGTGGCTCTTCACATCGGCCTTCCTACCACCACTAACGCTGGTGCCACTTCTGGCAAACCCGACCCGCTCATTGCTACTTCGCCTTCGGGTTATGTTCCGGGTCAGTATTGGATTCCTTCACCTGCACAGATCCTTATCGGGCCCACCCAATTCTCTTGCTCTGTCTGCAACAAAACCTTCAACCGTTTCAACAACATGCAGATGCATATGTGGGGACATGGATCGCAGTATAGGAAAGGGCCAGAATCTCTGAGAGGGGCAAAACCAGCGTCTTCGATTCTGAGACTTCCATGTTATTGTTGCGCCGAAGGTTGTCGGAACAACATCCACCATCCGAGGTCGAGGCCATTGAAAGACTTCAGAACTCTTCAGACACACTACAAGCGGAAGCACGGGGCGAAGCCGTTCGGATGCCGGAAGTGCGGGAAGCCGTTCGCCGTCCGGGGCGATTGGAGGACCCACGAGAAGAACTGCGGCAAGCTCTGGTTCTGTATCTGTGGTTCTGACTTCAAGCACAAGAGATCCCTCAAAGACCACGTCCGAGCCTTCGGCGATGGCCACGCTCCTCACACCGTCGACAGCCGCGATCCCCACCACCACCACCACGAACACGAAGAAGAAGAAGCTGACGTCGACGAAGACGAAGACGTCAACGACGAAGAAGACGATGATGATAATAACAGTGAAGTGTTCGTCTACAGCGGAAATCATGCCTCCATTTACTTGTGA 966 0.5217 MQTHDQYSNFSYIASCLEADQVLDDEHSISLSLGPPGQHTVSNSSKVMNPSITSSSNDVVSLHHHHHPQNPISDHLGVTVALHIGLPTTTNAGATSGKPDPLIATSPSGYVPGQYWIPSPAQILIGPTQFSCSVCNKTFNRFNNMQMHMWGHGSQYRKGPESLRGAKPASSILRLPCYCCAEGCRNNIHHPRSRPLKDFRTLQTHYKRKHGAKPFGCRKCGKPFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVDSRDPHHHHHEHEEEEADVDEDEDVNDEEDDDDNNSEVFVYSGNHASIYL 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g2565 321 ProSiteProfiles Zinc finger C2H2 type domain profile. 130 157 IPR013087 -
Prci10g2565 321 MobiDBLite consensus disorder prediction 33 59 - -
Prci10g2565 321 PANTHER ZINC FINGER PROTEIN WIP2 57 290 IPR043584 GO:0003700|GO:0010468
Prci10g2565 321 Gene3D Classic Zinc Finger 174 262 - -
Prci10g2565 321 SUPERFAMILY beta-beta-alpha zinc fingers 200 235 IPR036236 -
Prci10g2565 321 ProSitePatterns Zinc finger C2H2 type domain signature. 132 152 IPR013087 -
Prci10g2565 321 MobiDBLite consensus disorder prediction 28 70 - -
Prci10g2565 321 MobiDBLite consensus disorder prediction 262 286 - -
Prci10g2565 321 Gene3D Classic Zinc Finger 129 152 - -
Prci10g2565 321 MobiDBLite consensus disorder prediction 287 307 - -
Prci10g2565 321 MobiDBLite consensus disorder prediction 262 321 - -
Prci10g2565 321 FunFam Zinc finger protein WIP2 184 266 - -
Prci10g2565 321 SUPERFAMILY beta-beta-alpha zinc fingers 116 151 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g2565 Prci-Chr10 33545924 33547913 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g2565 25 274 C2H2 Transcription Factor Family AT1G13290 69.721 5.79e-122 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Prci10g2565 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g2565 - - aprc:113870355 416.001