Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g2563 ATGGACGGAGGAAGCTCTATGGATGAAAGCATTACGACTGACTCAGTTTCTGTTTCCCTTTCTCCGGTGACAATTCCATCGAAGAAGTCATCGCCGCCGCCGCCCAACAGTCTATGCCGCGTCGGCAGCGGTGCAAGCACCATCGTGGATTCTGACATCGTCGGAGTGGAAGCCGAGTCCCGGAAACTCCCGTCGTCGAAATACAAAGGGGTCGTACCACAGCCCAATGGCCGTTGGGGTGCTCAGATTTACGAGAAGCATCAGCGAGTCTGGCTGGGTACTTTCAATGAAGAAGATGAAGCCGCGAGGGCGTACGACATCGCCGCACAGAGATTTCGTGGGCGAGACGCAATCACCAATTTTAAACCTCTCGCCGCCGGCTCCGGTGCCGACCACCACGACGACGACTTTGAAGAGGCGTTCCTCAACGCGCATTCGAAAGCGGAGATCGTCGACATGCTCAGGAAGCACACTTACAATGACGAGCTGGAACAGTTCAAGCGAAACTACGGATTGACGGTGGACGCGAACGGGAACCGGATCTTCAAGGAAGGATCCAATGGTTCGGGTCGGGTCAAGAACACTCGTGATCAGCTCTTCGAGAAGGCGGTGACGCCGAGCGATGTGGGAAAGCTGAACAGGCTAGTGATCCCGAAGCAGCAAGCGGAGAAGCACTTCCCCCTGCCGCTGCCTGGAGGGATCTCCGCGCCGTACACGGCTGCCACGGCGGCCGTGAAGGGCGTCCTGTTGAATTTCGAGGATGGAGGTGGAAAGGTGTGGAGGTTCAGGTACTCGTACTGGAACAGTAGCCAGAGCTACGTTCTGACCAAGGGATGGAGTCGGTTCGTGAAGGAGAAGAACCTCAAAGCCGGAGACTCCGTTTTCTTCTCCCGCTCGACTGGACCGGACCGGCAACTTTACATCGACTGGAAGAAAGCCAGAATTAGCACCGCCACCGGCAGTACTACTTCAGGGGGTGAATTGGTTGAGCCGGCCGGTCCAGTGGTGGAGCCGGTTCAGATGGTAAGACTATTTGGGGTCAACATTTTGCAGATGCCCAATTCAGATGCCATGGCTGTTCCTGCAAGTGGGTGTTACAATAGGAAGAGAAGAGAGATGGATCTGTTCTCGTTGGAATGTACCAAAAAGCCAAAGATCACTGGAGCTTTGTAA 1173 0.5516 MDGGSSMDESITTDSVSVSLSPVTIPSKKSSPPPPNSLCRVGSGASTIVDSDIVGVEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDIAAQRFRGRDAITNFKPLAAGSGADHHDDDFEEAFLNAHSKAEIVDMLRKHTYNDELEQFKRNYGLTVDANGNRIFKEGSNGSGRVKNTRDQLFEKAVTPSDVGKLNRLVIPKQQAEKHFPLPLPGGISAPYTAATAAVKGVLLNFEDGGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDSVFFSRSTGPDRQLYIDWKKARISTATGSTTSGGELVEPAGPVVEPVQMVRLFGVNILQMPNSDAMAVPASGCYNRKRREMDLFSLECTKKPKITGAL 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g2563 390 FunFam AP2 domain-containing protein RAP2.8 66 123 - -
Prci10g2563 390 SUPERFAMILY DNA-binding pseudobarrel domain 198 308 IPR015300 -
Prci10g2563 390 ProSiteProfiles AP2/ERF domain profile. 67 122 IPR001471 GO:0003700|GO:0006355
Prci10g2563 390 Pfam AP2 domain 66 114 IPR001471 GO:0003700|GO:0006355
Prci10g2563 390 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 62 357 IPR044800 GO:0003700
Prci10g2563 390 CDD B3_DNA 199 299 IPR003340 GO:0003677
Prci10g2563 390 Gene3D AP2/ERF domain 66 123 IPR036955 GO:0003700|GO:0006355
Prci10g2563 390 Gene3D - 188 325 IPR015300 -
Prci10g2563 390 SMART B3_2 200 314 IPR003340 GO:0003677
Prci10g2563 390 MobiDBLite consensus disorder prediction 1 43 - -
Prci10g2563 390 MobiDBLite consensus disorder prediction 6 26 - -
Prci10g2563 390 Pfam B3 DNA binding domain 200 311 IPR003340 GO:0003677
Prci10g2563 390 CDD AP2 66 121 IPR001471 GO:0003700|GO:0006355
Prci10g2563 390 ProSiteProfiles B3 DNA-binding domain profile. 200 314 IPR003340 GO:0003677
Prci10g2563 390 SUPERFAMILY DNA-binding domain 66 122 IPR016177 GO:0003677
Prci10g2563 390 SMART rav1_2 67 128 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g2563 Prci-Chr10 33499789 33501217 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g2563 27 390 RAV Transcription Factor Family AT1G68840 60.847 1.10e-141 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-RAV Prci10g2563 B3 3.8e-27 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g2563 K09287 - gmx:100801107 505.753