Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g2552 ATGAAAAACCAGGAAGATCAAGGAAAGTGTTCATCTTCTCAAGCCATCAATAACATTCACAGCTATCAAGAACAGCTTCTTCTTCACCAAATGATGCAGCAACAGCTAAACGCCGACGTTTTCGGAGGTAATTCTGATAACAACAACAACAACAACGAAAGAGGATTGATGTTTCCTGAGGTTTCTCCAATCTTTCATCCGCCGCCGCCGCAGCAGCCGCCATGGTCTCTCCCTCCGGTTCACTCGTTCAACCCGGTCCGAGACACCGACCACCAGTTCTTGGTCCCTCCGCCGTCATCTTCGCTCTACCCGGGTCTCTTCAACCGCAGGGTTCCTTCCCTGCAGTTCGCTTACGACGGTCCGTCCAATTCCGATCACCACCATCTCCGGATCATTTCCGACACCCTCGGTGTCGGACCCGTCGGGGGTCAACCCAGCTCAGCTCCCTTCGGCCTCCAAGCCGAGCTTGGCAAGATGACGGCTCAAGAAATCATGGACGCCAAGGCTCTCGCGGCCTCAAAGAGCCACAGCGAAGCCGAAAGAAGACGCCGCGAGAGAATCAACAACCATCTCGCCAAGCTTCGAAGCTTATTGCCCAACACAACCAAAACAGACAAAGCTTCGTTACTAGCAGAAGTAATCCAGCATGTGAAGGAGCTGAAGCGTCAAACTTCAATAATAGCAGAAACAAGCCCGGTGCCGACGGAGGCCGACGAGTTGACGGTGGACGATGCTTCCGACGAGGACGGCAGGTTCGTGATCAAAGCCTCGCTTTGCTGCGAAGACAGGTCCGATCTCTTGCCGGATCTCATCAAAACATTGAAGGCCCTAAGGTTGAAAACAGTCAAGGCAGAGATCACCACGCTCGGCGGCCGCGTGAAGAACGTCTTGTTCATGACCGGAGAAGAAGACGAGTTGGGCTGCGGTGGCGGCGGAAGCCAGGAACAGAGACAGCATCAGCACTGTATAAGCTCCATACAAGAGGCTTTGAAGGCAGTGATGGAGAAGAACGGTGGAGGTGATGAGAATGGGAATGTGAAGAGGCAAAGAACTAATAATAATATCAATATCCTCGAACAAAACAGAGAGAGGGAACGGATCCTTTTCGTGAAAAGAGAAACCTTAGATAAAGTCCCAACATAG 1143 0.5188 MKNQEDQGKCSSSQAINNIHSYQEQLLLHQMMQQQLNADVFGGNSDNNNNNNERGLMFPEVSPIFHPPPPQQPPWSLPPVHSFNPVRDTDHQFLVPPPSSSLYPGLFNRRVPSLQFAYDGPSNSDHHHLRIISDTLGVGPVGGQPSSAPFGLQAELGKMTAQEIMDAKALAASKSHSEAERRRRERINNHLAKLRSLLPNTTKTDKASLLAEVIQHVKELKRQTSIIAETSPVPTEADELTVDDASDEDGRFVIKASLCCEDRSDLLPDLIKTLKALRLKTVKAEITTLGGRVKNVLFMTGEEDELGCGGGGSQEQRQHQHCISSIQEALKAVMEKNGGGDENGNVKRQRTNNNINILEQNRERERILFVKRETLDKVPT 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g2552 380 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 171 220 IPR011598 GO:0046983
Prci10g2552 380 FunFam transcription factor bHLH30 166 229 - -
Prci10g2552 380 CDD bHLH_AtAIG1_like 166 243 - -
Prci10g2552 380 PANTHER TRANSCRIPTION FACTOR BHLH30 102 357 IPR045847 GO:0003700|GO:0006355
Prci10g2552 380 Pfam Helix-loop-helix DNA-binding domain 174 220 IPR011598 GO:0046983
Prci10g2552 380 Gene3D - 166 227 IPR036638 GO:0046983
Prci10g2552 380 SMART finulus 177 226 IPR011598 GO:0046983
Prci10g2552 380 Coils Coil 348 368 - -
Prci10g2552 380 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 175 227 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g2552 Prci-Chr10 33272351 33276532 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g2552 12 363 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 57.609 2.90e-110 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci10g2552 HLH 2.7e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g2552 - - pcin:129322869 697.197