Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g2545 ATGGCTGCAACATTTGATTGCATTCATTCCATTAATCAATCTCGTGAGGATTGGAAGATCAAAGTACGCATTGTTCGATTGTGGTCCATTGCTCCTCATGCTGTTTCAAACGAGCCTACATCACTTGAGATGGTTTTGCAGGATGAAGCTGGTGATCGAATTGGAGCTTTTGTTAGGAAAGGAGTTGCTCGTCACCATTCTCGATTTCTTCGTGAAGGTCGTGCCTTTATTCTCACGCAATTTGGTGTTGTTGAGAATTCTGGATCATACAGGACCACACACCACGCTTTTAAAGTGATGTTTCAATATTCGACTACTGTGCGACCTGTGGTGGATAACAATAAGATCCATTCTCATGGCTTCTGCTTTACCCCATTTAGTGATATCATATGCGGTGATTCAAGGGAGGAATATTTAGTTGATATCATAGGGAGACTTGCTGCAGTTGGGGAGATTCAAAAAGTTGTTGTTAATGGACGACAGGAGCAAAGGCTTGATATATTATTGGATGATGATAAGAGAAATTACCTTGAAGTTACTTTATGGGGTGCCCTTGCCAATGATGTTCTTCGTTATATGAAAGGCCCCACACGTTGTCCCATCATTGTGATTGTCCAGTGGTGCAAGATACGAGTTTTCAAGGGGATTAAGAAAGTTTCCAACTCTCTTTTCGCTTCCCGTTTGTTCATCCATCCTACCATGGATGAAGTCAGCACCTTTGTTGAAAGCCTTAAAGCTGCTGGTGTCGAAATTGAGAAGAGGCCAATTCACCTTCCTAATCAACCTACCTTAAGTGTCGAGGATGAGATCTTGCACTGCCCGAATCGTAAATATATATGCCAGCTTCGTGGAGGGCCACTTGATGCTGATTGCGTTATCTATGCTGAGGTTGTTAGTGTTGACACCGAGCGGGGATGGTATTATATCGGCTGCCAAAAGTGTGCAAAAAAGGTTCTTCCTGATGGTGATGGTTTTTACTGTGACAAGTGCAATGAGTTCGTCAAGTCTGTGTCTCCAAGGTTTCGTGTGTGGTGTCGTGTTTATGATGCATCTAGCTCAACTGATGTTCTTATCTTCGACAAGGAATTTGCTACCTTCATGAAATGCTCTGCTGCTGAACTAAAAGAAAGTATAGGAAGGATGGATGTAACTGGTGTATGTGAAGGTAATGGCTTTGATAAGATAATAGGGAAAAAGTTCCTTTTCCGTGTTAGAATTTCAGAGGATTATGCTAAGGGCCTCCCTTGTGGCATTATAGTAAATGGAATGACTGATGATGAAAACACTGTGAAGAGTTTTCTGGATAAATGGGATCAACAAGTGCCTTCACCTAAATGTGTATCACAAACACCCTCAATTGAGGAAACTGAATCTACTGAAGATAGTTCCTCAACCATTACTCCATCAGAAGTTATTGAAGTTGGATTTGCCAATGGTGGTGAGCATGTTGAAAAGTCTCATATTGCGTACAACTTGCGCAAGGGAAAGAAGATTAAGTTGGAAGCAGATGAGGAGTGA 1518 0.4183 MAATFDCIHSINQSREDWKIKVRIVRLWSIAPHAVSNEPTSLEMVLQDEAGDRIGAFVRKGVARHHSRFLREGRAFILTQFGVVENSGSYRTTHHAFKVMFQYSTTVRPVVDNNKIHSHGFCFTPFSDIICGDSREEYLVDIIGRLAAVGEIQKVVVNGRQEQRLDILLDDDKRNYLEVTLWGALANDVLRYMKGPTRCPIIVIVQWCKIRVFKGIKKVSNSLFASRLFIHPTMDEVSTFVESLKAAGVEIEKRPIHLPNQPTLSVEDEILHCPNRKYICQLRGGPLDADCVIYAEVVSVDTERGWYYIGCQKCAKKVLPDGDGFYCDKCNEFVKSVSPRFRVWCRVYDASSSTDVLIFDKEFATFMKCSAAELKESIGRMDVTGVCEGNGFDKIIGKKFLFRVRISEDYAKGLPCGIIVNGMTDDENTVKSFLDKWDQQVPSPKCVSQTPSIEETESTEDSSSTITPSEVIEVGFANGGEHVEKSHIAYNLRKGKKIKLEADEE 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g2545 505 CDD RPA1_DBD_C 291 409 IPR047192 -
Prci10g2545 505 PANTHER OS03G0429900 PROTEIN 7 469 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Prci10g2545 505 CDD RPA1_DBD_A_like 19 107 - -
Prci10g2545 505 Gene3D - 7 113 IPR012340 -
Prci10g2545 505 CDD RPA1_DBD_B_like 141 245 - -
Prci10g2545 505 Pfam Domain of unknown function DUF223 43 137 IPR003871 -
Prci10g2545 505 Pfam Replication factor-A C terminal domain 293 409 IPR013955 -
Prci10g2545 505 Gene3D - 274 423 IPR012340 -
Prci10g2545 505 SUPERFAMILY Nucleic acid-binding proteins 5 113 IPR012340 -
Prci10g2545 505 Gene3D - 115 253 IPR012340 -
Prci10g2545 505 SUPERFAMILY Nucleic acid-binding proteins 275 411 IPR012340 -
Prci10g2545 505 SUPERFAMILY Nucleic acid-binding proteins 122 250 IPR012340 -
Prci10g2545 505 MobiDBLite consensus disorder prediction 442 468 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g2545 Prci-Chr10 33171330 33173734 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g2545 10 376 Core DNA Replication Machinery Family AT5G08020 19.098 3.48e-14 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g2545 - - pcin:129299041 1006.9