Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g2522 ATGGAGAAATTGATAATTAGAAATCATATTCATGCTCGACAGTCGACACAAGAGAAGAGAGACCAAATTATGTACGAAGATACGTCCACTGGGTTTTCTGCGGGAACGGCGTCGTCTTTGTTGTCAGAAGATTGCTTCTCTCAAATGGCTTCTTCTTCTGTGGCCTCACACACTCTCAGCCCTAGCTTCCCGGAGAATGTGGGTCTTTCTATGGAAAACTTAGCCTTCACTAATTCACAACGCGCTATTATGATTCCCAACATCGACGCTTCTTCTTCTGCATTCACTGAACCGAATCCGTTGGAAGATGATTCAAACCAGCTTGTAATTTCCTTTGACCAGTCCAAATGGCACGACGCTGCTATGAATATGAACTTCCATCACCAAAATTATCATCAGCCTCGAGATCGACCACTTCCTTATCCCACTGCATCAGATCTTCGTCACCGTGATGTTCTCTATAGCTTTCCCAGTAGTGCTTACACTTCTTCGTTTGTAAACTCAACATCCTTAATCTCTTTTGGAAACCCAGCTACGCAGAACACCGTTGAACTTCAAACTAATCCTTCTGGCCGCTCAACATTTGGAGCTGAAATCACAAATGTGTCCTCTGTTCTGTTTCAGGACTCGTTTTTGCATAGGAATCTGCCTGCGGGTCCTCCGGCAAACAGAGAGTGGTTTCAGTCTCTGCCAGCTGCTGCAAGAAATGATTTTCTGATATTTAATGGGGACAATGATGATGACAAAGAAAGAAGTGGGGTTGTTTCATATTTAGATGCTGATCGTGGTAGAGAATTTGGTGATAGTAATAATGATTTCCTCAAGATTTCCCAGGATTTGGCTCCTCATGGCAGATCAAAAGGAGGAGGAGGAATAAGAGGAGGCAAAAGGGTCAGACAGGTCACTATTGAGAAGAAAAGAAGAGTGGATTTTACCAGCAAATTTGATGCGTTAAGAGAACTCATCCCAAAACCCACCAAGAATGATAGAGCATCTCTGCTGTGTGGTGCTATTGAGTACATCCAAGAGCTTCGTAGATCAGTGGAAAATCTCACATTATTAGTGAATAAGAAGAGATGTGGGAAAGAGAGGATCAAGAGGCACAAGGTTGAAGAAGAAGGAGAAGAAGATCAAGAAGAAGCTGCTTTAGGGGATTTGGAGAGCTGCAACTTGAAGCCACTAAGTGAACGAGATCATGAACCTGTTCTCCCTCACAACAGATGCATGATTAGGAGCAATTTGCTTCAGAAGAAATCTGCAGACACAGAGGTTGATGTTCGAATCATTGAGGACGAGGTGACGATCAAGCTTGTTCAGAGAAAGAACACAAACTGCTTGCTGTATGCTTCCAGGGCTCTGGATGAACTTGAGCTTGATCTCCAACATGTTGCTGGTGGACACATTGGCGATTTCTGCAGTTTCTTGTTCAACAGCAAGATATATGAAGGTTCCTCTGTGTGTGCAAGTGCCATAGCCAACAAACTCATTCAAGTCATGGAAGTACCTTGA 1509 0.4347 MEKLIIRNHIHARQSTQEKRDQIMYEDTSTGFSAGTASSLLSEDCFSQMASSSVASHTLSPSFPENVGLSMENLAFTNSQRAIMIPNIDASSSAFTEPNPLEDDSNQLVISFDQSKWHDAAMNMNFHHQNYHQPRDRPLPYPTASDLRHRDVLYSFPSSAYTSSFVNSTSLISFGNPATQNTVELQTNPSGRSTFGAEITNVSSVLFQDSFLHRNLPAGPPANREWFQSLPAAARNDFLIFNGDNDDDKERSGVVSYLDADRGREFGDSNNDFLKISQDLAPHGRSKGGGGIRGGKRVRQVTIEKKRRVDFTSKFDALRELIPKPTKNDRASLLCGAIEYIQELRRSVENLTLLVNKKRCGKERIKRHKVEEEGEEDQEEAALGDLESCNLKPLSERDHEPVLPHNRCMIRSNLLQKKSADTEVDVRIIEDEVTIKLVQRKNTNCLLYASRALDELELDLQHVAGGHIGDFCSFLFNSKIYEGSSVCASAIANKLIQVMEVP 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g2522 502 Pfam Helix-loop-helix DNA-binding domain 296 344 IPR011598 GO:0046983
Prci10g2522 502 PANTHER TRANSCRIPTION FACTOR BHLH91 47 500 IPR045895 GO:0006355|GO:0048658
Prci10g2522 502 SMART finulus 301 350 IPR011598 GO:0046983
Prci10g2522 502 Gene3D - 293 359 IPR036638 GO:0046983
Prci10g2522 502 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 295 344 IPR011598 GO:0046983
Prci10g2522 502 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 294 360 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g2522 Prci-Chr10 32818125 32820271 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g2522 293 500 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31220 50.718 4.18e-55 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci10g2522 HLH 1.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g2522 - - pcin:129322575 975.311