Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g2521 ATGACTAGTCTTGATATAATCTTCAGATTTTCTATTCAACTATTCGGCGCGCTCTTCAACTACCTCAAGTTAGCTTCGTCCTACTTCAAATGGGTTTTAGAGTTCCTTCTCTACCACCCATTTTACACCCTCCATGTTCATCATCATCAGTTTCAAGAGTTTCATCAGATCGTTACAGAAGAAGAACAAGTGGAGATATGGCGTCATCGCGGAGAAGAAGTGGATTGTGCAGTGTGTCTGAGCAAGATTGGTGAAGGAGACGAAATTAGTGTGTTGAGATGTGAGCATGTTTTTCATAGGCTTTGTTTGAATCAATGGATCGGGTTCAGCAACTTTACTTGTCCTCTTTGCAGAGACTTTCTGGGTTCTGGGATTAGAACTGTTCTTTTCTTCAAGTTTTCTTCATTCTCTGATAATTCTGATCAGCGTGAGAACTGGTGGCTTCGATAG 450 0.4111 MTSLDIIFRFSIQLFGALFNYLKLASSYFKWVLEFLLYHPFYTLHVHHHQFQEFHQIVTEEEQVEIWRHRGEEVDCAVCLSKIGEGDEISVLRCEHVFHRLCLNQWIGFSNFTCPLCRDFLGSGIRTVLFFKFSSFSDNSDQRENWWLR 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g2521 149 ProSiteProfiles Zinc finger RING-type profile. 76 118 IPR001841 -
Prci10g2521 149 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 48 122 IPR013083 -
Prci10g2521 149 SMART ring_2 76 117 IPR001841 -
Prci10g2521 149 Pfam Ring finger domain 75 118 IPR001841 -
Prci10g2521 149 PANTHER - 29 120 - -
Prci10g2521 149 SUPERFAMILY RING/U-box 58 122 - -
Prci10g2521 149 CDD RING-H2 76 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g2521 Prci-Chr10 32801855 32802304 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g2521 75 123 C3H Transcription Factor Family AT1G15100 59.184 2.05e-14 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g2521 K16282 - pcin:129296604 200.675