Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g2520 ATGCTGGTCAACTATCTCAAGCTAGCTTCCTCCCTTTTCAAATGGGTTTTAGATTTCCTTATCTACCACCCATTTTACAGCCTTCGTGTTCATTATCATCAACCTCTTCAAGAGTTTCATCAGATGTTTACTGAAGCAGAACAAGTAGAGACATGGCATCGTCGTGGAGAAGAAGTGGATTGTGCAGTGTGTCTCAGCAAGATTGGTGAAGGAGACGAAGTTAGAGTTCTGAGGTGTGAGCATGTGTTTCATAGGCTTTGTTTGAATCAATGGGTAGGTTTGGGGAATTATAATTGCCCTCTTTGTAGGGACTTTCTGGGTTCTGGGAATAGGGCTATTAATGGTGATGAGGGAAGAGACGTGCATGTGCTCTTCTTCAAGTTTTCTTCCTTTTCTAGTGATTCAGAGCGTGACAACTGGTGGCTACGGTGA 432 0.4329 MLVNYLKLASSLFKWVLDFLIYHPFYSLRVHYHQPLQEFHQMFTEAEQVETWHRRGEEVDCAVCLSKIGEGDEVRVLRCEHVFHRLCLNQWVGLGNYNCPLCRDFLGSGNRAINGDEGRDVHVLFFKFSSFSSDSERDNWWLR 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g2520 143 Pfam Ring finger domain 60 103 IPR001841 -
Prci10g2520 143 SUPERFAMILY RING/U-box 60 106 - -
Prci10g2520 143 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 38 107 IPR013083 -
Prci10g2520 143 ProSiteProfiles Zinc finger RING-type profile. 61 103 IPR001841 -
Prci10g2520 143 SMART ring_2 61 102 IPR001841 -
Prci10g2520 143 PANTHER RING ZINC FINGER PROTEIN-RELATED 44 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g2520 Prci-Chr10 32788284 32788715 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g2520 60 121 C3H Transcription Factor Family AT1G15100 50.000 1.14e-14 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g2520 K16282 - pcin:129296604 189.504