Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g2360 ATGAGAGCAGGGAAAGGGAATCAGGAGGAAGATGACTACGAGGAGGAAGAGTTCGGTTCTAGAAAGGAAGGTCCTTCGTCCGCGCCCAATAGCACTAACAACAACAAAGATACAAAAGCTATTGATAAGGCTAGTGCTACAAGATCAAAACATTCAGTTACTGAGCAGCGAAGGCGGAGCAAGATAAATGAGAGATTCCAGATATTAAGAGATCTCATACCTCATAGTGATCAAAAGAGGGATACTGCGTCATTCCTATTAGAGGTGATTGAGTATGTCCAATACTTACAGGAGAAGGTACAAAAGTATGAAGGCTCATATCAGGGTTGGGGTCAAGAGCCCACAAAGTTGATGCCTTGGAGAAACAGTCACTGGCGTGTTCAAAGCTTTGGCCAACCTCAAGCTGTAAAAAATGGTTCTGGTCCTGTATCACCTTTTCCTGGAAAGTTTGATGAAAGCAACATTAGTGTCTCTCCAACTGTGCTTAGTGGCTCTCAAAATATGATAGATCCTGAACAGAGCAGAGATATTGTCAGTAAAACAGCAGAGAGGCAAGCTGAGTTAGAATGCAAGGGGATACCTCTGCCAATGCCTATGCATGCAAACATGTCTGTTCCTGTCAGAAGTGATGGTGCGCTTGCCCATCCTCTTCATGGGTCTGTTTCTGAGGGGCAATCAACTGAATGTCCTGCCAACAGTGAATCTCAGAATCCACAGGAAGAGCTGACAATTGAAGGAGGAACAATTAACATCTCAAGTGCATACTCTCAAGGGCTGTTACACAATCTGACTCAAGCACTACAGAGTGCTGGTTTAGATCTCTCACAGGCTAGCATTTCTGTTCAAATCAATCTTGGAAAGCGGGCAAACAAAGGACTGGGCTGTGGGACATCTGCTTCTATGCATCATGAGAATATCCCATCTAGCAATCAAGCAATACCACATTTTAGAGATGCTGGAAACGGGGAAGATACAGATCAAGCTCAGAAGAGGCTAAAAACGTAG 1005 0.4418 MRAGKGNQEEDDYEEEEFGSRKEGPSSAPNSTNNNKDTKAIDKASATRSKHSVTEQRRRSKINERFQILRDLIPHSDQKRDTASFLLEVIEYVQYLQEKVQKYEGSYQGWGQEPTKLMPWRNSHWRVQSFGQPQAVKNGSGPVSPFPGKFDESNISVSPTVLSGSQNMIDPEQSRDIVSKTAERQAELECKGIPLPMPMHANMSVPVRSDGALAHPLHGSVSEGQSTECPANSESQNPQEELTIEGGTINISSAYSQGLLHNLTQALQSAGLDLSQASISVQINLGKRANKGLGCGTSASMHHENIPSSNQAIPHFRDAGNGEDTDQAQKRLKT 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g2360 334 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 44 118 IPR036638 GO:0046983
Prci10g2360 334 MobiDBLite consensus disorder prediction 1 59 - -
Prci10g2360 334 Pfam Helix-loop-helix DNA-binding domain 48 97 IPR011598 GO:0046983
Prci10g2360 334 MobiDBLite consensus disorder prediction 41 59 - -
Prci10g2360 334 FunFam BHLH domain class transcription factor 44 116 - -
Prci10g2360 334 Gene3D - 43 116 IPR036638 GO:0046983
Prci10g2360 334 MobiDBLite consensus disorder prediction 305 334 - -
Prci10g2360 334 MobiDBLite consensus disorder prediction 220 239 - -
Prci10g2360 334 MobiDBLite consensus disorder prediction 319 334 - -
Prci10g2360 334 CDD bHLH_AtBIM_like 45 121 - -
Prci10g2360 334 MobiDBLite consensus disorder prediction 211 239 - -
Prci10g2360 334 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 5 334 IPR044295 GO:0003700|GO:0006351|GO:0046983
Prci10g2360 334 MobiDBLite consensus disorder prediction 24 40 - -
Prci10g2360 334 SMART finulus 52 102 IPR011598 GO:0046983
Prci10g2360 334 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 46 96 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g2360 Prci-Chr10 30611726 30618258 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g2360 1 334 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G69010 55.917 2.70e-119 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci10g2360 HLH 1.3e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g2360 - - pcin:129321267 658.292