Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g2359 ATGAGAGCAGGGAAAGGGAATCAGGAGGAAGATGACTACGAGGAGGAAGAGTTCGGTTCTAGAAAGGAAGGTCCTTCGTCCGCGCCCAATAGCACTAACAACAACAAAGAAAATCTGCATACCGTTGTTACAGAGGAATTCTGCGCTGTGACCTTTTCAGATACAAAAGCTATTGATAAGGCTAGTGCTACAAGATCAAAACATTCAGTTACTGAGCAGCGAAGGCGGAGCAAGATAAATGAGAGATTCCAGATATTAAGAGATCTCATACCTCATAGTGATCAAAAGAGGGATACTGCGTCATTCCTATTAGAGGTGATTGAGTATGTCCAATACTTACAGGAGAAGGTACAAAAGTATGAAGGCTCATATCAGGGTTGGGGTCAAGAGCCCACAAAGTTGATGCCTTGGAGAAACAGTCACTGGCGTGTTCAAAGCTTTGGCCAACCTCAAGCTGTAAAAAATGGTTCTGGTCCTGTATCACCTTTTCCTGGAAAGTTTGATGAAAGCAACATTAGTGTCTCTCCAACTGTGCTTAGTGGCTCTCAAAATATGATAGATCCTGAACAGAGCAGAGATATTGTCAGTAAAACAGCAGAGAGGCAAGCTGAGTTAGAATGCAAGGGGATACCTCTGCCAATGCCTATGCATGCAAACATGTCTGTTCCTGTCAGAAGTGATGGTGCGCTTGCCCATCCTCTTCATGGGTCTGTTTCTGAGGGGCAATCAACTGAATGTCCTGCCAACAGTGAATCTCAGAATCCACAGGAAGAGCTGACAATTGAAGGAGGAACAATTAACATCTCAAGTGCATACTCTCAAGGGCTGTTACACAATCTGACTCAAGCACTACAGAGTGCTGGTTTAGATCTCTCACAGGCTAGCATTTCTGTTCAAATCAATCTTGGAAAGCGGGCAAACAAAGGACTGGGCTGTGGGACATCTGCTTCTATGCATCATGAGAATATCCCATCTAGCAATCAAGCAATACCACATTTTAGAGATGCTGGAAACGGGGAAGATACAGATCAAGCTCAGAAGAGGCTAAAAACGTAG 1056 0.4413 MRAGKGNQEEDDYEEEEFGSRKEGPSSAPNSTNNNKENLHTVVTEEFCAVTFSDTKAIDKASATRSKHSVTEQRRRSKINERFQILRDLIPHSDQKRDTASFLLEVIEYVQYLQEKVQKYEGSYQGWGQEPTKLMPWRNSHWRVQSFGQPQAVKNGSGPVSPFPGKFDESNISVSPTVLSGSQNMIDPEQSRDIVSKTAERQAELECKGIPLPMPMHANMSVPVRSDGALAHPLHGSVSEGQSTECPANSESQNPQEELTIEGGTINISSAYSQGLLHNLTQALQSAGLDLSQASISVQINLGKRANKGLGCGTSASMHHENIPSSNQAIPHFRDAGNGEDTDQAQKRLKT 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g2359 351 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 63 113 IPR011598 GO:0046983
Prci10g2359 351 FunFam BHLH domain class transcription factor 61 133 - -
Prci10g2359 351 Pfam Helix-loop-helix DNA-binding domain 65 114 IPR011598 GO:0046983
Prci10g2359 351 CDD bHLH_AtBIM_like 62 138 - -
Prci10g2359 351 MobiDBLite consensus disorder prediction 237 256 - -
Prci10g2359 351 MobiDBLite consensus disorder prediction 228 256 - -
Prci10g2359 351 Gene3D - 60 133 IPR036638 GO:0046983
Prci10g2359 351 MobiDBLite consensus disorder prediction 1 38 - -
Prci10g2359 351 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 61 135 IPR036638 GO:0046983
Prci10g2359 351 MobiDBLite consensus disorder prediction 322 351 - -
Prci10g2359 351 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 5 351 IPR044295 GO:0003700|GO:0006351|GO:0046983
Prci10g2359 351 MobiDBLite consensus disorder prediction 24 38 - -
Prci10g2359 351 MobiDBLite consensus disorder prediction 336 351 - -
Prci10g2359 351 SMART finulus 69 119 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g2359 Prci-Chr10 30611726 30618259 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g2359 1 351 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G69010 53.239 3.76e-115 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci10g2359 HLH 1.4e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g2359 - - pcin:129321267 703.36