Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Prci10g2297 | ATGGAGGTCAATCCACCAGAGACCTCTTTGAGAAAGCCCAAAAGAAAACGAAGCCGGGTAGACCCGGAACTCGAGCGGCTGAACTCATTGTCGTGGAACCCTTCCCTTACTGAAAATGAAGATTCTTTTTCTTTGCTTGTAGGGTCAAATGAACTTGAAGGAGGTTTCCTTTCACTGGAAGAGATTGATGAAGCTGAGTATGGTTTAGAGATTCCTGATCCCAAAGAAGACAAGAGAAAGAAGAAGTCTAAACATAACGCAGATTTGAAGAAACAGAAGCTGGGTGAAGTAGAGGGTGCCTTCAATGATGAGGCTGGGGTGAATTTTGAAGAAAACGAGGATGAGAGTGTGATGACTAAAAAGAAGGAAAAGAAGAAGAAGGAAAAGAAGAAGAAGAAAAAGGAAGCAGCTGACCAAGTTATTGATGTGAAGGATGATAATGAGGAAGAGGACGTTGATGAAATGGAATTTTATGCATGGAGTGAGTTGAGACTTCATCCTCTGCTCATGAAAGCAATCCACAAGTTGGGGTTCAAGGAGCCCACGCCAATACAGAAAGCTTGTATTCCAGCTGCTGCTCATCAGGGAAAGGATGTTGTTGGGGCTTCAGAGACTGGATCTGGGAAAACTCTTGCTTTTGGTTTGCCCATTTTGCAACGCCTTTTAGAGGAGAGGGAGAAGGCTGCAAAGATGGTTGAACAAAGGGGTGAAGAACCTGACAAATATGCCCCTACTGGCCTTCTAAGGGCTCTTATCATTGCTCCAACTAGGGAACTTGCACTTCAGGTCACTGATCATCTGAAAGCAGTAGCCAAATATATCAACGTTAGGGTGACTCCTATAGTTGGGGGTATTTTGGCCGAAAAACAGGAAAGACTCTTAAAAACAAGGCCTGAGATTATTGTTGGCACTCCTGGGAGGTTATGGGAACTTATGTCAGCTGGCGAAAAGCATCTAGTTGAGTTACATTCCTTGTCGTTCTTTGTGCTTGATGAGGCCGATCGAATGATACAAAGTGGTCATTTTAAAGAGTTGCAATCAATAATTGACATGCTTCCCATGTCCAACACTTCTGGTGCTGATGATCGTCAACCTGCACAAAATTGCATCACAATTTCAAGCTACCAAAGAAAGAAAAGACAAACTCTAGTTTTTTCGGCAACAGTAGCACTATCTGCTGATTTTCGCAAGAAGCTAAAGCGTGCTTCAACAAAACAAAATCAATCAGTATTAGATGGATTTAATTCCATTGAAGCCCTGTCTGAACGTGCAGGAATGAGACCCAATGCTGCCGTGATTGATCTCACTAATCCATCAATATTGGCAGCCAAGCTTGAAGAATCATTTATCGAATGCAAAGAAGAAGACAAAGATGCTTATCTGTACTATATTTTGACTGTCCATGGACAAGGCCGCACAATAGTATTCTGTACATCAATTGCAGCTTTGCGCCATATCTCTTCTCTACTGCGCATTCTTGACATTAATGCTTGGACTCTTCATGCTCAAATGCAGCAGCGAGCTCGTTTAAAGGCCATTGATCGCTTTCGTGAAGATGAAAATGGCATACTTGTTGCTACTGATGTCGCAGCGAGGGGTCTTGATATTCCTGGTGTTAGAGCAGTTGTCCACTATCAGCTTCCACATTCAGCAGATGTTTATGTTCATAGAAGTGGAAGAACAGCTAGGGCTTCTGCTGAAGGGTGCAGCATTGCTTTAATCTCACCAAAAGATACGTCAAAGTTTGCTTCGCTGTGCAAGTCCTTTTCCAAGGACACTTTTCAGCGATTTCCTTTGGAGAATTCATACATGCCAGAAGTTCTAAAGCGGTTGTCTATTGCCCGTCAAATAGACAAAATAATGCGGAAGGATTCACAGGAAAAAGCTCAGAAAAGCTGGTTTGAGCGGAATGCTGAATCCGTGGAGTTAGTTACAGAAAATTATGACAGTGAGGAGGAAAGAGTTAAGAAATATAGGCAAATGAAAGCCAGCTCTACTCATTTGAAGAAGTTGCAACAGGAGCTCAATGTGCTTCTTTCACGTCCCTTGCAATCAAAACAATTTTCACATCGATATTTAGCTGGGGCGGGTATCACACCTCTGATGCAGGAACAGTTCCAACAATTAGCCAGGCAAAAGCAAGGAAGTGCAGGAGTAACTGGTAAGGGAAAGTTGGTTGTGATTGGTCAAGATTGCGTAGAAGCGCTTCAAGCTTTGCGGAATGCTGGTGAAGAGGTACGCATGGAGGTCAAGGATATGACAGGGAAGAGGATCGAGAATTTGAAACGAAAGAGAAAAGAGGAGAAAAAACGTTTGCGTGACCAGCGAAGGAAGCAAAAGAGAGAGATGAAAATGGAGAATGAATATAATTGA | 2373 | 0.4286 | MEVNPPETSLRKPKRKRSRVDPELERLNSLSWNPSLTENEDSFSLLVGSNELEGGFLSLEEIDEAEYGLEIPDPKEDKRKKKSKHNADLKKQKLGEVEGAFNDEAGVNFEENEDESVMTKKKEKKKKEKKKKKKEAADQVIDVKDDNEEEDVDEMEFYAWSELRLHPLLMKAIHKLGFKEPTPIQKACIPAAAHQGKDVVGASETGSGKTLAFGLPILQRLLEEREKAAKMVEQRGEEPDKYAPTGLLRALIIAPTRELALQVTDHLKAVAKYINVRVTPIVGGILAEKQERLLKTRPEIIVGTPGRLWELMSAGEKHLVELHSLSFFVLDEADRMIQSGHFKELQSIIDMLPMSNTSGADDRQPAQNCITISSYQRKKRQTLVFSATVALSADFRKKLKRASTKQNQSVLDGFNSIEALSERAGMRPNAAVIDLTNPSILAAKLEESFIECKEEDKDAYLYYILTVHGQGRTIVFCTSIAALRHISSLLRILDINAWTLHAQMQQRARLKAIDRFREDENGILVATDVAARGLDIPGVRAVVHYQLPHSADVYVHRSGRTARASAEGCSIALISPKDTSKFASLCKSFSKDTFQRFPLENSYMPEVLKRLSIARQIDKIMRKDSQEKAQKSWFERNAESVELVTENYDSEEERVKKYRQMKASSTHLKKLQQELNVLLSRPLQSKQFSHRYLAGAGITPLMQEQFQQLARQKQGSAGVTGKGKLVVIGQDCVEALQALRNAGEEVRMEVKDMTGKRIENLKRKRKEEKKRLRDQRRKQKREMKMENEYN | 790 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Prci10g2297 | 790 | Coils | Coil | 218 | 238 | - | - | |
Prci10g2297 | 790 | Coils | Coil | 641 | 661 | - | - | |
Prci10g2297 | 790 | MobiDBLite | consensus disorder prediction | 66 | 97 | - | - | |
Prci10g2297 | 790 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 85 | 353 | IPR027417 | - | |
Prci10g2297 | 790 | MobiDBLite | consensus disorder prediction | 757 | 790 | - | - | |
Prci10g2297 | 790 | CDD | DEADc_DDX24 | 169 | 434 | - | - | |
Prci10g2297 | 790 | SMART | helicmild6 | 484 | 565 | IPR001650 | - | |
Prci10g2297 | 790 | MobiDBLite | consensus disorder prediction | 111 | 138 | - | - | |
Prci10g2297 | 790 | CDD | SF2_C_DEAD | 445 | 574 | - | - | |
Prci10g2297 | 790 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 329 | 337 | IPR000629 | - | |
Prci10g2297 | 790 | Coils | Coil | 117 | 146 | - | - | |
Prci10g2297 | 790 | Pfam | DEAD/DEAH box helicase | 182 | 390 | IPR011545 | GO:0003676|GO:0005524 | |
Prci10g2297 | 790 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 190 | 407 | IPR014001 | - | |
Prci10g2297 | 790 | Coils | Coil | 751 | 789 | - | - | |
Prci10g2297 | 790 | MobiDBLite | consensus disorder prediction | 763 | 778 | - | - | |
Prci10g2297 | 790 | Pfam | Helicase conserved C-terminal domain | 456 | 564 | IPR001650 | - | |
Prci10g2297 | 790 | PANTHER | RNA HELICASE | 123 | 716 | - | - | |
Prci10g2297 | 790 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Prci10g2297 | 790 | MobiDBLite | consensus disorder prediction | 7 | 22 | - | - | |
Prci10g2297 | 790 | Gene3D | - | 441 | 688 | IPR027417 | - | |
Prci10g2297 | 790 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 444 | 605 | IPR001650 | - | |
Prci10g2297 | 790 | MobiDBLite | consensus disorder prediction | 68 | 97 | - | - | |
Prci10g2297 | 790 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 249 | 581 | IPR027417 | - | |
Prci10g2297 | 790 | Gene3D | - | 115 | 408 | IPR027417 | - | |
Prci10g2297 | 790 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 158 | 186 | IPR014014 | GO:0003724 | |
Prci10g2297 | 790 | SMART | ultradead3 | 177 | 417 | IPR014001 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Prci10g2297 | Prci-Chr10 | 29527975 | 29539208 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Prci10g2297 | 159 | 605 | Eukaryotic Initiation Factors Gene Family | AT5G11200 | 28.791 | 1.03e-41 | 157 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Prci10g2297 | K14805 | - | gmx:100806018 | 1147.88 |