Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g2297 ATGGAGGTCAATCCACCAGAGACCTCTTTGAGAAAGCCCAAAAGAAAACGAAGCCGGGTAGACCCGGAACTCGAGCGGCTGAACTCATTGTCGTGGAACCCTTCCCTTACTGAAAATGAAGATTCTTTTTCTTTGCTTGTAGGGTCAAATGAACTTGAAGGAGGTTTCCTTTCACTGGAAGAGATTGATGAAGCTGAGTATGGTTTAGAGATTCCTGATCCCAAAGAAGACAAGAGAAAGAAGAAGTCTAAACATAACGCAGATTTGAAGAAACAGAAGCTGGGTGAAGTAGAGGGTGCCTTCAATGATGAGGCTGGGGTGAATTTTGAAGAAAACGAGGATGAGAGTGTGATGACTAAAAAGAAGGAAAAGAAGAAGAAGGAAAAGAAGAAGAAGAAAAAGGAAGCAGCTGACCAAGTTATTGATGTGAAGGATGATAATGAGGAAGAGGACGTTGATGAAATGGAATTTTATGCATGGAGTGAGTTGAGACTTCATCCTCTGCTCATGAAAGCAATCCACAAGTTGGGGTTCAAGGAGCCCACGCCAATACAGAAAGCTTGTATTCCAGCTGCTGCTCATCAGGGAAAGGATGTTGTTGGGGCTTCAGAGACTGGATCTGGGAAAACTCTTGCTTTTGGTTTGCCCATTTTGCAACGCCTTTTAGAGGAGAGGGAGAAGGCTGCAAAGATGGTTGAACAAAGGGGTGAAGAACCTGACAAATATGCCCCTACTGGCCTTCTAAGGGCTCTTATCATTGCTCCAACTAGGGAACTTGCACTTCAGGTCACTGATCATCTGAAAGCAGTAGCCAAATATATCAACGTTAGGGTGACTCCTATAGTTGGGGGTATTTTGGCCGAAAAACAGGAAAGACTCTTAAAAACAAGGCCTGAGATTATTGTTGGCACTCCTGGGAGGTTATGGGAACTTATGTCAGCTGGCGAAAAGCATCTAGTTGAGTTACATTCCTTGTCGTTCTTTGTGCTTGATGAGGCCGATCGAATGATACAAAGTGGTCATTTTAAAGAGTTGCAATCAATAATTGACATGCTTCCCATGTCCAACACTTCTGGTGCTGATGATCGTCAACCTGCACAAAATTGCATCACAATTTCAAGCTACCAAAGAAAGAAAAGACAAACTCTAGTTTTTTCGGCAACAGTAGCACTATCTGCTGATTTTCGCAAGAAGCTAAAGCGTGCTTCAACAAAACAAAATCAATCAGTATTAGATGGATTTAATTCCATTGAAGCCCTGTCTGAACGTGCAGGAATGAGACCCAATGCTGCCGTGATTGATCTCACTAATCCATCAATATTGGCAGCCAAGCTTGAAGAATCATTTATCGAATGCAAAGAAGAAGACAAAGATGCTTATCTGTACTATATTTTGACTGTCCATGGACAAGGCCGCACAATAGTATTCTGTACATCAATTGCAGCTTTGCGCCATATCTCTTCTCTACTGCGCATTCTTGACATTAATGCTTGGACTCTTCATGCTCAAATGCAGCAGCGAGCTCGTTTAAAGGCCATTGATCGCTTTCGTGAAGATGAAAATGGCATACTTGTTGCTACTGATGTCGCAGCGAGGGGTCTTGATATTCCTGGTGTTAGAGCAGTTGTCCACTATCAGCTTCCACATTCAGCAGATGTTTATGTTCATAGAAGTGGAAGAACAGCTAGGGCTTCTGCTGAAGGGTGCAGCATTGCTTTAATCTCACCAAAAGATACGTCAAAGTTTGCTTCGCTGTGCAAGTCCTTTTCCAAGGACACTTTTCAGCGATTTCCTTTGGAGAATTCATACATGCCAGAAGTTCTAAAGCGGTTGTCTATTGCCCGTCAAATAGACAAAATAATGCGGAAGGATTCACAGGAAAAAGCTCAGAAAAGCTGGTTTGAGCGGAATGCTGAATCCGTGGAGTTAGTTACAGAAAATTATGACAGTGAGGAGGAAAGAGTTAAGAAATATAGGCAAATGAAAGCCAGCTCTACTCATTTGAAGAAGTTGCAACAGGAGCTCAATGTGCTTCTTTCACGTCCCTTGCAATCAAAACAATTTTCACATCGATATTTAGCTGGGGCGGGTATCACACCTCTGATGCAGGAACAGTTCCAACAATTAGCCAGGCAAAAGCAAGGAAGTGCAGGAGTAACTGGTAAGGGAAAGTTGGTTGTGATTGGTCAAGATTGCGTAGAAGCGCTTCAAGCTTTGCGGAATGCTGGTGAAGAGGTACGCATGGAGGTCAAGGATATGACAGGGAAGAGGATCGAGAATTTGAAACGAAAGAGAAAAGAGGAGAAAAAACGTTTGCGTGACCAGCGAAGGAAGCAAAAGAGAGAGATGAAAATGGAGAATGAATATAATTGA 2373 0.4286 MEVNPPETSLRKPKRKRSRVDPELERLNSLSWNPSLTENEDSFSLLVGSNELEGGFLSLEEIDEAEYGLEIPDPKEDKRKKKSKHNADLKKQKLGEVEGAFNDEAGVNFEENEDESVMTKKKEKKKKEKKKKKKEAADQVIDVKDDNEEEDVDEMEFYAWSELRLHPLLMKAIHKLGFKEPTPIQKACIPAAAHQGKDVVGASETGSGKTLAFGLPILQRLLEEREKAAKMVEQRGEEPDKYAPTGLLRALIIAPTRELALQVTDHLKAVAKYINVRVTPIVGGILAEKQERLLKTRPEIIVGTPGRLWELMSAGEKHLVELHSLSFFVLDEADRMIQSGHFKELQSIIDMLPMSNTSGADDRQPAQNCITISSYQRKKRQTLVFSATVALSADFRKKLKRASTKQNQSVLDGFNSIEALSERAGMRPNAAVIDLTNPSILAAKLEESFIECKEEDKDAYLYYILTVHGQGRTIVFCTSIAALRHISSLLRILDINAWTLHAQMQQRARLKAIDRFREDENGILVATDVAARGLDIPGVRAVVHYQLPHSADVYVHRSGRTARASAEGCSIALISPKDTSKFASLCKSFSKDTFQRFPLENSYMPEVLKRLSIARQIDKIMRKDSQEKAQKSWFERNAESVELVTENYDSEEERVKKYRQMKASSTHLKKLQQELNVLLSRPLQSKQFSHRYLAGAGITPLMQEQFQQLARQKQGSAGVTGKGKLVVIGQDCVEALQALRNAGEEVRMEVKDMTGKRIENLKRKRKEEKKRLRDQRRKQKREMKMENEYN 790
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Prci10g2297 790 Coils Coil 218 238 - -
Prci10g2297 790 Coils Coil 641 661 - -
Prci10g2297 790 MobiDBLite consensus disorder prediction 66 97 - -
Prci10g2297 790 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 85 353 IPR027417 -
Prci10g2297 790 MobiDBLite consensus disorder prediction 757 790 - -
Prci10g2297 790 CDD DEADc_DDX24 169 434 - -
Prci10g2297 790 SMART helicmild6 484 565 IPR001650 -
Prci10g2297 790 MobiDBLite consensus disorder prediction 111 138 - -
Prci10g2297 790 CDD SF2_C_DEAD 445 574 - -
Prci10g2297 790 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 329 337 IPR000629 -
Prci10g2297 790 Coils Coil 117 146 - -
Prci10g2297 790 Pfam DEAD/DEAH box helicase 182 390 IPR011545 GO:0003676|GO:0005524
Prci10g2297 790 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 190 407 IPR014001 -
Prci10g2297 790 Coils Coil 751 789 - -
Prci10g2297 790 MobiDBLite consensus disorder prediction 763 778 - -
Prci10g2297 790 Pfam Helicase conserved C-terminal domain 456 564 IPR001650 -
Prci10g2297 790 PANTHER RNA HELICASE 123 716 - -
Prci10g2297 790 MobiDBLite consensus disorder prediction 1 22 - -
Prci10g2297 790 MobiDBLite consensus disorder prediction 7 22 - -
Prci10g2297 790 Gene3D - 441 688 IPR027417 -
Prci10g2297 790 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 444 605 IPR001650 -
Prci10g2297 790 MobiDBLite consensus disorder prediction 68 97 - -
Prci10g2297 790 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 249 581 IPR027417 -
Prci10g2297 790 Gene3D - 115 408 IPR027417 -
Prci10g2297 790 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 158 186 IPR014014 GO:0003724
Prci10g2297 790 SMART ultradead3 177 417 IPR014001 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Prci10g2297 Prci-Chr10 29527975 29539208 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g2297 159 605 Eukaryotic Initiation Factors Gene Family AT5G11200 28.791 1.03e-41 157
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g2297 K14805 - gmx:100806018 1147.88