Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g2296 ATGGGAAGAGGTAGGGTTCAGCTGAAGAGGATAGAGAACAAGATCAACAGGCAAGTTACGTTCTCCAAGAGAAGGATTGGGTTAGTGAAGAAAGCTCATGAGATCTCTGTGCTCTGTGATGCTGAGGTTGCTTTGATCGTCTTCAATCACTCAGGAAAGCTCTTCGAATATGCCACTGATTCTTGCATGGAGAACATTCTGGAACGCTATGAAAGATACCATTATATTGAGAGGCAGCTTGCTGGAAACGATACTGCGACACAGGAAAACTGGACCATTGAGTATTCTAGACTGAAGGCCAAGATTGATCTTTTGCAGAGAAACCAGAGGCATTATATGGGAGAAGATCTTGCTTTACTCAACCTCAGAGAGCTTCAGAGTCTAGAGCTACAGTTAGAAACAGCTATCAAACATATCCGTACACGCAAAAACCAGCTCATGTACGAGTCCATTTCTGAGCTTCAGAAAAAGGAGAAGGTGATGCAGGAACAGAATAGCATGCTTGCAAAGAAGATAAAAGAGAGGGAGAAGGCAGCAGCAGGAGAGGCACAAGAAGCACGATGGGTGCAGCCAAGCCATGAAGCAGCAGATCCTAATCCTTCTTTTTTATTCCCACACCCTCTTCCCACTTTAAACATCGGTGGTAATTACGTTGAAGAAGAGACTGCAGCGGGAAGGAACGATCTTGATCTGACGCTGGAGCCACTGTATGGCTGCCACCTTAGCTGCTTTACTCCCAGATTATAA 747 0.4511 MGRGRVQLKRIENKINRQVTFSKRRIGLVKKAHEISVLCDAEVALIVFNHSGKLFEYATDSCMENILERYERYHYIERQLAGNDTATQENWTIEYSRLKAKIDLLQRNQRHYMGEDLALLNLRELQSLELQLETAIKHIRTRKNQLMYESISELQKKEKVMQEQNSMLAKKIKEREKAAAGEAQEARWVQPSHEAADPNPSFLFPHPLPTLNIGGNYVEEETAAGRNDLDLTLEPLYGCHLSCFTPRL 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g2296 248 SUPERFAMILY SRF-like 2 92 IPR036879 GO:0003677|GO:0046983
Prci10g2296 248 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Prci10g2296 248 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 166 - -
Prci10g2296 248 Coils Coil 88 108 - -
Prci10g2296 248 MobiDBLite consensus disorder prediction 181 200 - -
Prci10g2296 248 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Prci10g2296 248 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Prci10g2296 248 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Prci10g2296 248 Pfam K-box region 85 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci10g2296 248 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci10g2296 248 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Prci10g2296 248 Coils Coil 151 171 - -
Prci10g2296 248 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Prci10g2296 248 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Prci10g2296 248 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Prci10g2296 248 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Prci10g2296 248 FunFam MADS-box transcription factor MADS-MC 13 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g2296 Prci-Chr10 29503767 29512577 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g2296 1 245 MADS-box Gene Family AT1G26310 61.328 3.53e-103 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Prci10g2296 K-box 1.3e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g2296 K09264 - gmx:100810129 345.125