Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g2295 ATGGGAAGAGGTAGGGTTCAGCTGAAGAGGATAGAGAACAAGATCAACAGGCAAGTTACGTTCTCCAAGAGAAGGATTGGGTTAGTGAAGAAAGCTCATGAGATCTCTGTGCTCTGTGATGCTGAGGTTGCTTTGATCGTCTTCAATCACTCAGGAAAGCTCTTCGAATATGCCACTGATTCTTGCATGGAGAACATTCTGGAACGCTATGAAAGATACCATTATATTGAGAGGCAGCTTGCTGGAAACGATACTGCGACACAGGAAAACTGGACCATTGAGTATTCTAGACTGAAGGCCAAGATTGATCTTTTGCAGAGAAACCAGAGGCATTATATGGGAGAAGATCTTGCTTTACTCAACCTCAGAGAGCTTCAGAGTCTAGAGCTACAGTTAGAAACAGCTATCAAACATATCCGTACACGCAAAAACCAGCTCATGTACGAGTCCATTTCTGAGCTTCAGAAAAAGGAACAGAATAGCATGCTTGCAAAGAAGATAAAAGAGAGGGAGAAGGCAGCAGCAGGAGAGGCACAAGAAGCACGATGGGTGCAGCCAAGCCATGAAGCAGCAGATCCTAATCCTTCTTTTTTATTCCCACACCCTCTTCCCACTTTAAACATCGGTGGTAATTACGTTGAAGAAGAGACTGCAGCGGGAAGGAACGATCTTGATCTGACGCTGGAGCCACTGTATGGCTGCCACCTTAGCTGCTTTACTCCCAGATTATAA 732 0.4495 MGRGRVQLKRIENKINRQVTFSKRRIGLVKKAHEISVLCDAEVALIVFNHSGKLFEYATDSCMENILERYERYHYIERQLAGNDTATQENWTIEYSRLKAKIDLLQRNQRHYMGEDLALLNLRELQSLELQLETAIKHIRTRKNQLMYESISELQKKEQNSMLAKKIKEREKAAAGEAQEARWVQPSHEAADPNPSFLFPHPLPTLNIGGNYVEEETAAGRNDLDLTLEPLYGCHLSCFTPRL 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g2295 243 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 161 - -
Prci10g2295 243 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Prci10g2295 243 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Prci10g2295 243 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Prci10g2295 243 MobiDBLite consensus disorder prediction 176 196 - -
Prci10g2295 243 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Prci10g2295 243 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Prci10g2295 243 Coils Coil 88 108 - -
Prci10g2295 243 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Prci10g2295 243 Pfam K-box region 85 161 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci10g2295 243 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Prci10g2295 243 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Prci10g2295 243 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Prci10g2295 243 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Prci10g2295 243 ProSiteProfiles K-box domain profile. 88 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci10g2295 243 SUPERFAMILY SRF-like 2 92 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g2295 Prci-Chr10 29503763 29512577 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g2295 1 239 MADS-box Gene Family AT1G26310 60.392 6.95e-99 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Prci10g2295 K-box 6.6e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g2295 K09264 - gmx:100810129 331.257