Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g2288 ATGGAATCTTGGAGTTATCTCTCAGAAGAGAAAGGCTGTTTGATTTATGATGACATGGATTTTTCGCTCCAAGCTTTTATGAGAGGGAAAAAAGGCAAGAATCCTTGTAACTTGGAGAGGGATGAATTTGGCTCTTGTATTGGGGAAGCTAAAAACATGGAAGTTTTTGACCTGGGATTTCATGACTCGTTTCAAAATGAGCTAGATAGAAATCATAGTAAAAGAGTGAATACCTCTGCCATGGAATCATCGTTCATGGAACAAGAATCTCAGCCAATGTTTTTAGGTTCTCGAGCTGAATCTAAAAGTCCCAATTCATCACTGGTTGATTTGAAGCTGGGGAGAATAGCAGATTGTAAAGATGCAAGTAGTGATAAAATTGCAAGCAGAGCTCGGTCTTCCGGCTCGTCAACTCAGACGCCTTTTTGTATAGTTTATGGTTGTAACATGGATCTTAGCTCCTCAAAAGAGTACCACAAAAGGCATAAAGTTTGTGAGGCTCACTCCAAGACAGCCAAAGTTATTGTTAATGGAATTGAGCAGAGGTTTTGTCAGCAGTGTAGCAGGTTCCATTTGCTAGCTGAGTTTGATGAGGGCAAGCGCAGTTGTCGTAGACGTCTAGCTGGACACAATCAACGCAGAAGGAAGCCTCAGTTCGATTACTTATCTGGCAAACCCTACAAGATGCTCCAGTTACATCAAGGGTCCAAATATCATCTGGAGGCTTCATTCCAGAAGAGACCCCAGTTTGCCTCACAAGACATGATCAGTAGAGGCATTTTGCATGAACAACAACATATCACATCTAGTCAGGAGGAGTTGTCTACGGCCTCAAACGCGAGCTGTGCTCTCTCTCTTCTGTCAGTTCAATCACAGAACCTGTCATGCCGCCGCCCGGCAGCAAGGCCGGGAGCTACTAGTTCCCATGCTAGTCATGCAAACCACAGTGATGAACAAGTTTCCAAAATACATCTGGGCATTACCTCTCTGACTAGTTATGTACAAAATGAGTCGTCATCACATGGATTGAGGTCCATGGAAGCTGTCAAGAATGGGTCCATATTGAATCATGCCAAACACTATCTTCCACCTGAGGATGGAGCCACTGTTGATCTACTCCAATTGTCTTCACATCTTCAAAGAGTGGAGCATCAGAGGAATTCATTTTTCAGTGAGGCTTTGAAAGGGTTCATGGAGATGTAA 1203 0.4339 MESWSYLSEEKGCLIYDDMDFSLQAFMRGKKGKNPCNLERDEFGSCIGEAKNMEVFDLGFHDSFQNELDRNHSKRVNTSAMESSFMEQESQPMFLGSRAESKSPNSSLVDLKLGRIADCKDASSDKIASRARSSGSSTQTPFCIVYGCNMDLSSSKEYHKRHKVCEAHSKTAKVIVNGIEQRFCQQCSRFHLLAEFDEGKRSCRRRLAGHNQRRRKPQFDYLSGKPYKMLQLHQGSKYHLEASFQKRPQFASQDMISRGILHEQQHITSSQEELSTASNASCALSLLSVQSQNLSCRRPAARPGATSSHASHANHSDEQVSKIHLGITSLTSYVQNESSSHGLRSMEAVKNGSILNHAKHYLPPEDGATVDLLQLSSHLQRVEHQRNSFFSEALKGFMEM 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g2288 400 Gene3D - 133 204 IPR036893 GO:0003677|GO:0005634
Prci10g2288 400 FunFam Squamosa promoter-binding-like protein 14 134 204 - -
Prci10g2288 400 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 98 329 IPR044817 GO:0003677
Prci10g2288 400 Pfam SBP domain 143 216 IPR004333 GO:0003677
Prci10g2288 400 SUPERFAMILY SBT domain 141 222 IPR036893 GO:0003677|GO:0005634
Prci10g2288 400 ProSiteProfiles Zinc finger SBP-type profile. 140 217 IPR004333 GO:0003677
Prci10g2288 400 MobiDBLite consensus disorder prediction 298 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g2288 Prci-Chr10 29419071 29424379 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g2288 109 387 SBP-box Gene Family AT1G69170 42.492 1.04e-58 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Prci10g2288 SBP 3.7e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g2288 - - pcin:129284403 788.104