Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g2285 ATGAACCTGGAAGAGAAAGTCACCATGGACTTGGTTCAGCCATCTGAACATTTCTGCTATGTCCGTTGCAACTTCTGCAACACTGTGCTTGCGGTTGGGATCCCATGCAAGAGGCTGCTGGACACAGTGACAGTGAAGTGTGGCCATTGCAGCAACCTGTCCTTCCTGAGCACCAGGCCTCCTCCATCTCATCACAATCACAACAACAACAACGAAACACAAGACAATATTGATCACACACTCACCCTTCAGGGCTTTTATGGTGATTACAAGAAGGGACAGGCCTCGTCTTCATCATCTTCATCTTCTTTAACTACGTCCAATGATCCAGTGTCCCCCAAAACAGCACCTTTCGTTGTCAAACCACCTGAGAAGAAACACAGACTTCCTTCGGCTTACAATCGCTTCATGAAAGAGGAGATTCAGAGAATCAAAGCAGCCAACCCTGAGATTCCTCATCGGGAAGCTTTCAGCGCTGCTGCCAAAAATTGGGCAAGGTACATTCCAAATTCACCAAGCAGTTCACTTTCAGGAAGTAAGAACAAGGAATGA 552 0.4692 MNLEEKVTMDLVQPSEHFCYVRCNFCNTVLAVGIPCKRLLDTVTVKCGHCSNLSFLSTRPPPSHHNHNNNNETQDNIDHTLTLQGFYGDYKKGQASSSSSSSSLTTSNDPVSPKTAPFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARYIPNSPSSSLSGSKNKE 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g2285 183 PANTHER PROTEIN YABBY 6-RELATED 13 178 IPR006780 GO:0007275
Prci10g2285 183 SUPERFAMILY HMG-box 111 165 IPR036910 -
Prci10g2285 183 MobiDBLite consensus disorder prediction 92 130 - -
Prci10g2285 183 FunFam Protein CRABS CLAW 96 171 - -
Prci10g2285 183 Gene3D High mobility group box domain 110 171 IPR036910 -
Prci10g2285 183 CDD HMG-box_SF 128 164 - -
Prci10g2285 183 MobiDBLite consensus disorder prediction 92 113 - -
Prci10g2285 183 Pfam YABBY protein 14 167 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g2285 Prci-Chr10 29387132 29388945 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g2285 1 181 C2C2-YABBY Transcription Factor Family AT1G69180 63.784 2.39e-70 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Prci10g2285 YABBY 3.6e-58 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g2285 K25796 - gmx:100819079 262.692