Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g2280 ATGGCGATGCAAGGTGTTCAGAAGAACACACTGTACGTGGGAGGGCTAGCGGAGGAAGTGAACGGCATTCTTCACGCTGCCTTCATACCCTTTGGCGACATCAAGGACGTCAAGACGCCGCTTGACCAGGCCACGCAGAAGCACCGGTCTTTCGGCTTCGTCACCTTCTTGGAGAGGGAGGACGCCGCCGCCGCCATGGACAACATGGACGGTGCTGAACTCTACGGCCGTGTTCTTACTGTTAACTACGCCCTTCCTGAGCGCATTAAGGGTGGTGAACAGGGTTGGGCTGCTCAGCCAATTTGGGCGGATGCGGATACTTGGTTTGAGCGGCAGCAGCAAGAAGAGGAAATGCGTCGTATTGAGGCAGAAAATCGAGCTGCTATGCAGGCTGCAAGATATACACAGAAACAAACGGCCCAGGAGCGAGAAGGAGAGGAAGAGGAAATTGACATCAAGGATGATCCCATGGCAAAGGCTGAAGCAGAGGCTCTGAAGCAAAATGGTTCTTAA 513 0.54 MAMQGVQKNTLYVGGLAEEVNEXILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEREDAAAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMRRIEAENRAAMQAARYTQKQTAQEREGEXEEEIDIKDDPMAKAEAEALKQNGS 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g2280 172 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 80 IPR000504 GO:0003723
Prci10g2280 172 SUPERFAMILY RNA-binding domain, RBD 6 96 IPR035979 GO:0003676
Prci10g2280 172 FunFam Peptidyl-prolyl cis-trans isomerase 1 153 - -
Prci10g2280 172 CDD RRM_PPIE 11 85 IPR034168 GO:0003723
Prci10g2280 172 PANTHER ATPASE E1 3 170 - -
Prci10g2280 172 SMART rrm1_1 10 83 IPR000504 GO:0003723
Prci10g2280 172 Coils Coil 112 132 - -
Prci10g2280 172 MobiDBLite consensus disorder prediction 131 172 - -
Prci10g2280 172 Gene3D - 2 151 IPR012677 -
Prci10g2280 172 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 9 87 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g2280 Prci-Chr10 29336788 29338930 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g2280 9 87 Eukaryotic Initiation Factors Gene Family AT3G11400 37.975 4.16e-11 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g2280 - - ccaj:109797476 269.626