Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Prci10g2178 | ATGGAGGAGACGAGGAAGTTCGTGTGCAAGTTCTGCAGCAAGAGGTTCCCTAGTGGCAAGTCTCTGGGCGGTCACATTAGAACTCACCTGAATCAACATTCAAGCAATAAGACCATTACTGCTAACAATCCAGGCAAGTTCGGGATCAGTAACAATGGTGTTGATGCTGCAAGAAAGAAGAGGAAGGAGAGAGATTTAAGCTCAGATTATGGCCTCAGAGAGAATCCCAGAACGACAAAGAGGTTTGTTGATCATCATCCCGGCCTCACTTTACATCATAATAAGGAGAAGTTCTGTAGAGAATGTGGGAAAGGATTCCCTTCTTTGAAAGCTCTATGTGGTCACATGGCTTGTCACTCTGAGAAAGAGAAGCAGAAATTGGCAATCATGGATTCTCAATCTGATACTGAAGCTTCTGATCTAGAAGATTTCAAGAGAACCAGGTTCATGACCCTTAACAATAATCAAAGTAACCTAACTTCTTCTTCTTTGTCAGAGGTTGAACAAGAAGAAGATGATGATGATGATGGAGAAGTAAAAGAGGTGGCTAAGTTCTTGATATTGTTGTCCAAGGGTCACTATAACCAAAGAGGTTGTTTTGGTTTGGAGAAGGAGTCTAATTCTGACAACTATTCTGCAGTTTTAGAGGCCAAATCACCGACTGTTGATGCCAGAATTGTCATTAACGATGGCCAGAATAAGGTCAAGAATAAGAACTCTGTCTATAATGCTTCTCAGCTTGTGAAGGTGGGAAAGGACAAGATGAAGTCGAAGTTTTCAGATTCTGGGTGTTCTAGAAATGGTTCCAAAAAGGAAGATTCAAATATTTCAATTGATGGGGTTTTCAGGAATGATGGTTTTAATCGACCAAAAGTGGAAGATGAATATGGATTTAAGATGATGATAAACAACAGATGCTACAGAAGAAGCAGCAGGAACATAGAATCCAAAAAACTAGTGTTGGGGAATTCAGATTATGCTAAGTTTGATTCATTTAACAGTGCCAAACATGAAAATCTTAGTCACAATTTGGATGAAGTTTCCTGCAAGAAGAAGAAAAAAAGTTTTCCTAATGATGAAGACTACAACAAAGACTCATATGATTCAGAATCTTATGCAAGTGCTGAGAAAAGCACAGACAGTACTGACTCTGATTCTTTTCCTTATTCTTATCAGAAGCCAAAGAGCAGCAAGAGTAGTAACAACAAGGCCAAGAAGAAAGTGATGAAGAAATCAAAGAAAACAAAGGAGCATGAGTGTCCCATCTGTAACAAAACTTTCAGGTCAGGCCAAGCCTTGGGAGGTCACAAAAGGTCCCATTTTATTGGTGGATTTGAAGAGAACCACAACAACACCACTGGAATAGTCAAACAAGATTCTCCTTCTCCTTCTCCTTCTGTTGTTCCTTGCCTGATTGATCTTAATCTACCTGCTCATCCCGATGAATAA | 1449 | 0.3975 | MEETRKFVCKFCSKRFPSGKSLGGHIRTHLNQHSSNKTITANNPGKFGISNNGVDAARKKRKERDLSSDYGLRENPRTTKRFVDHHPGLTLHHNKEKFCRECGKGFPSLKALCGHMACHSEKEKQKLAIMDSQSDTEASDLEDFKRTRFMTLNNNQSNLTSSSLSEVEQEEDDDDDGEVKEVAKFLILLSKGHYNQRGCFGLEKESNSDNYSAVLEAKSPTVDARIVINDGQNKVKNKNSVYNASQLVKVGKDKMKSKFSDSGCSRNGSKKEDSNISIDGVFRNDGFNRPKVEDEYGFKMMINNRCYRRSSRNIESKKLVLGNSDYAKFDSFNSAKHENLSHNLDEVSCKKKKKSFPNDEDYNKDSYDSESYASAEKSTDSTDSDSFPYSYQKPKSSKSSNNKAKKKVMKKSKKTKEHECPICNKTFRSGQALGGHKRSHFIGGFEENHNNTTGIVKQDSPSPSPSVVPCLIDLNLPAHPDE | 482 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Prci10g2178 | 482 | SUPERFAMILY | beta-beta-alpha zinc fingers | 5 | 119 | IPR036236 | - | |
| Prci10g2178 | 482 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 420 | 440 | IPR013087 | - | |
| Prci10g2178 | 482 | MobiDBLite | consensus disorder prediction | 445 | 465 | - | - | |
| Prci10g2178 | 482 | MobiDBLite | consensus disorder prediction | 399 | 413 | - | - | |
| Prci10g2178 | 482 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 97 | 124 | IPR013087 | - | |
| Prci10g2178 | 482 | MobiDBLite | consensus disorder prediction | 346 | 371 | - | - | |
| Prci10g2178 | 482 | MobiDBLite | consensus disorder prediction | 35 | 74 | - | - | |
| Prci10g2178 | 482 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 9 | 29 | IPR013087 | - | |
| Prci10g2178 | 482 | PANTHER | C2H2-LIKE ZINC FINGER PROTEIN | 1 | 479 | - | - | |
| Prci10g2178 | 482 | SMART | c2h2final6 | 418 | 440 | IPR013087 | - | |
| Prci10g2178 | 482 | SMART | c2h2final6 | 7 | 29 | IPR013087 | - | |
| Prci10g2178 | 482 | SMART | c2h2final6 | 97 | 119 | IPR013087 | - | |
| Prci10g2178 | 482 | MobiDBLite | consensus disorder prediction | 372 | 398 | - | - | |
| Prci10g2178 | 482 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 99 | 119 | IPR013087 | - | |
| Prci10g2178 | 482 | Pfam | C2H2-type zinc finger | 7 | 30 | - | - | |
| Prci10g2178 | 482 | Pfam | C2H2-type zinc finger | 418 | 440 | - | - | |
| Prci10g2178 | 482 | Pfam | C2H2-type zinc finger | 99 | 121 | - | - | |
| Prci10g2178 | 482 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 418 | 440 | IPR013087 | - | |
| Prci10g2178 | 482 | MobiDBLite | consensus disorder prediction | 55 | 74 | - | - | |
| Prci10g2178 | 482 | MobiDBLite | consensus disorder prediction | 35 | 49 | - | - | |
| Prci10g2178 | 482 | SUPERFAMILY | beta-beta-alpha zinc fingers | 415 | 441 | IPR036236 | - | |
| Prci10g2178 | 482 | Gene3D | Classic Zinc Finger | 390 | 450 | - | - | |
| Prci10g2178 | 482 | MobiDBLite | consensus disorder prediction | 346 | 414 | - | - | |
| Prci10g2178 | 482 | MobiDBLite | consensus disorder prediction | 443 | 467 | - | - | |
| Prci10g2178 | 482 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 7 | 34 | IPR013087 | - | |
| Prci10g2178 | 482 | MobiDBLite | consensus disorder prediction | 155 | 176 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Prci10g2178 | Prci-Chr10 | 27909032 | 27911314 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Prci10g2178 | 5 | 482 | C2H2 Transcription Factor Family | AT1G26610 | 35.701 | 2.06e-69 | 226 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | C2H2 | Prci10g2178 | zf-C2H2_6 | 1.3e-11 | CL0361 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Prci10g2178 | - | - | pcin:129284607 | 894.034 |